Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028895.1 Length=116138 Score E Sequences producing significant alignments: (Bits) Value seq5078 141 7e-29 >seq5078 Length=902 Score = 141 bits (156), Expect = 7e-29 Identities = 264/383 (69%), Gaps = 10/383 (3%) Strand=Plus/Minus Query 51270 CATTTCTGCCTGTTTTCCCGCGTTGAATGGTCTGGCATCCGGGTTTCCTAAGTAACCACA 51329 || |||| |||| || || |||||||| ||||||||||||||| | || | ||| || || Sbjct 395 CACTTCTTCCTGCTTGCCTGCGTTGAACGGTCTGGCATCCGGGCTACCGAGGTAGCCGCA 336 Query 51330 AACCCTGCGAGTGACAGAGCAGCTTTCTTTG-TCGTTATTACCACACTTAGGGCACTTGA 51388 |||| || || || || || ||| | | |||| |||||| || || ||||| ||| Sbjct 335 CACCCGACGCGTAACGGA-CACCTTGGATGGCTCGTGATTACCGCATTTCGGGCAGGTGA 277 Query 51389 AACCTTCCGAGGTGCATAGGAACTCTCCTTTATACCCGCACTTAAAGCACTCGTCTATTG 51448 | |||| ||| || ||| || || || | || |||| ||||||| || || | Sbjct 276 AGCCTTTGCTGGTACAGGAGAATTCGCCGGTAAAGCCACACTCGTAGCACTCATCGATCG 217 Query 51449 GGGTGTTAGTACCATAATACGGTACTTGATAGTACGCGTAATTCCACACATCTTCCAATG 51508 | ||||| ||||| ||||| || || | ||| ||||| ||| |||||||||| || Sbjct 216 GCGTGTTGGTACCGTAATAAGGCACGCGGCTGTAGCTGTAATCCCATACATCTTCCAGTG 157 Query 51509 CTTCTATGTTATTAATCATAGAAGGGAATTCCCCGTAACATATGTGGCCGCC---CGCTG 51565 ||| | ||| | || ||| |||| |||||||| ||| || || || Sbjct 156 CTTTCAGGTTGTGTTGCAGGTTCGGGTATTCGCCGTAACAGATGAACCCCCCATTGGCCA 97 Query 51566 A-GTAGGGTACGAACTGCGCTTCAAAATCGATCTTCTCGTAAGGTGTTACTTTCTTGGCT 51624 | | ||||| | ||||||||||||| | ||| ||||| || | || || || || Sbjct 96 ATGGCGGGTAAG----GCGCTTCAAAATCCAGCTTGTCGTACGGATTGACCTTTTTCTCT 41 Query 51625 ACGTCTAGGTGGAATGAGTTGGT 51647 ||||| || ||||| |||||| Sbjct 40 ACGTCCAGATGGAAGCTGTTGGT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 371449511457679