Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq5757 127 1e-24 >seq5757 Length=557 Score = 127 bits (140), Expect = 1e-24 Identities = 321/482 (67%), Gaps = 11/482 (2%) Strand=Plus/Minus Query 66625 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 66684 ||| || ||||| || | ||||| || | || || || ||| || || || |||| Sbjct 536 CATTGATGCTGAACATGCGCTGGATCCGGTATATGCGAAAAAGCTGGGCGTTGATATCGA 477 Query 66685 CAACCTCGTGGTGGT-TCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCC 66743 |||||| || || | |||||| ||||| || ||||| || |||| ||| |||| | Sbjct 476 CAACCTGCTG-TGTTCTCAGCCAGATACGGGTGAGCAAGCATTGGAAATCTGTGACGCCT 418 Query 66744 TCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGC 66803 | | ||||||| | | | || ||||||||||||| || || || ||| Sbjct 417 TAACCCGCTCTGGCGCGGTTGATGTGATCATCGTTGACTCCGTAGCAGCGTTGACGCCAA 358 Query 66804 GCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGT 66863 || || |||||||||| ||||| ||| ||| | |||||| || || | ||| Sbjct 357 AAGCAGAAATCGAAGGCGAAATCGGTGACTCACACATGGGCCTGGCGGCACGTATGATGA 298 Query 66864 CACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGG 66923 ||||| ||||| || || | || | | | | | ||||||||||| | ||| Sbjct 297 GCCAGGCAATGCGTAAACTGGCCGGTAACCTGAAAAACGCCAACACGCTGCTGATCTTCA 238 Query 66924 TCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAATGAGACCACCA 66980 |||||||| | || |||||| || | | ||||| |||| || ||||||| Sbjct 237 TCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGCTA--ACCCG---GAAACCACCA 183 Query 66981 CGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCA 67040 | || || || || ||| ||||||||||| || ||| |||| ||||||| || | | Sbjct 182 CCGGTGGTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTGGACATCCGTCGTATTGGCG 123 Query 67041 CCGAGAAGGAA-GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAAC 67099 | | ||| ||| ||||| | | || || | | ||||| ||||| || || |||||| Sbjct 122 CGGTGAAAGAAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTGAAGAAC 63 Query 67100 AA 67101 || Sbjct 62 AA 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242816813431374