Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq8597 95.1 4e-15 seq3694 93.3 1e-14 >seq8597 Length=531 Score = 95.1 bits (104), Expect = 4e-15 Identities = 158/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 39514 GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGAT 39573 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 166 GAAGTCGACGTCGAAGTCGGGCATCGAAACACGTTCCGGGTTAAGGAAACGTTCGAACAG 225 Query 39574 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39633 || | | | || || || |||||||| || || || ||| | | ||| || Sbjct 226 CAGGTCAA-ATTCAGCGGATCAAGATCGGTGATTTTCAGCGCATAGGCGACTAACGAACC 284 Query 39634 AGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAA 39693 || | |||||||| || ||||| ||| ||| || || |||| ||| |||||| Sbjct 285 GGCACCGGAGCCACGGCCCGGGCCAACCGGCACGTTATTGTCTTTCGACCACTGGATGAA 344 Query 39694 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCA 39740 || |||| |||||||| ||||| |||||||||||||||| Sbjct 345 CTCCATTACGATCAGGAAGTAACCTGGGAAGCCCATCTGGTTGATCA 391 >seq3694 Length=227 Score = 93.3 bits (102), Expect = 1e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 39377 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGGGCCTTGATCCTGCCGTAC 39436 ||| | | ||||||||| | |||| || | || ||| |||| | | | ||| | Sbjct 222 GGCATCTGCAGCACGCGCCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTTCCGAAG 163 Query 39437 GTCGCGATCTGTGC-GACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTC 39495 || |||||| || ||||| |||| |||||| ||| |||||| ||||||| || Sbjct 162 GTGATGATCTGCGCCGACCTGATCGCGGCCGTAGCGCTCCTGCACGTAC-GGATCACCTC 104 Query 39496 GCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTT 39555 ||| ||||| | | |||||||||||| | ||| ||||| |||||||| || || || Sbjct 103 GCCGCGGCGGTCCTGACAGAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCCGGATT 44 Query 39556 CAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39598 ||||| |||||||| | || ||| |||| || || ||| Sbjct 43 GAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160211721746150