Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq4204 147 2e-30 seq2293 107 2e-18 >seq4204 Length=800 Score = 147 bits (162), Expect = 2e-30 Identities = 290/420 (69%), Gaps = 17/420 (4%) Strand=Plus/Minus Query 142074 CTGTGCGGTGATCTGTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGGTTCGAT 142133 ||||||| |||||||||| | | || ||||| ||| || ||||| |||||||| Sbjct 738 CTGTGCGATGATCTGTGCGGTGACGGCGGTCGCGGTGGAGATCGACTTCGGTGGTTCGAT 679 Query 142134 GTCTGCGTTACCCATCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAGACAGCA 142193 || || |||||||| |||||||| || | |||||| ||||||||||| | ||| ||| Sbjct 678 CTCGGCATTACCCATTTTGAAGCCGTTGGTCAGCATGCCTTTCAAATCGATCAGCATGCA 619 Query 142194 GTTTGTGTAT-GGCGTGAACGGGCTGTAATCCAGATCATGATAGTGGATGTCGCCG-GAG 142251 | ||| || || ||| || |||||| ||||| || |||||||| |||||| | Sbjct 618 G-TTGAACATAGGGAAGAAGGGCGAGTAATCGAGATCGTGGTAGTGGATCTCGCCGCGCT 560 Query 142252 TCATGCGC---TTCTACGATATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCGCT 142308 || || || | ||| | || || |||||||| | |||| ||||||| || Sbjct 559 TCGTGGGCCAGCACCACGTCACGT---GGCAGGATATGCTGTTTGGCGTAATGCTTGGCG 503 Query 142309 ACAATACCCGCCAGCAAATCGCGCTGTGTCGGGAATACCCTTGC-GTCTTTGTTCGCGTT 142367 || || || ||||||| |||||||| || ||| || |||||| |||||| || || || Sbjct 502 ACGATCCCGGCCAGCAGGTCGCGCTGGGT-GGGGATCACCTTGCTGTCTTTATTGGCATT 444 Query 142368 CTCGTTGGTGATCTCTTTGTTGGACAGATTCACCATACCGGAGATATCT---TTGAACAG 142424 ||||| | | | ||||| | | ||||| ||| ||| ||| |||| | Sbjct 443 TTCGTTCAGCAACGCCATGTTGCTTTGTTCCACCAGGCCGCGGATCTCTTGGTTGAGTCG 384 Query 142425 CTTACTTTTCTGTTCACGGGCAATATCGCGATCGTGACGATATTCGATGTATGCACGGGC 142484 | || | | || || || | || |||||||||||||| ||||| || || || || Sbjct 383 CCCAC---GCAGCTCGCGCGCCACGTCACGATCGTGACGATACTCGATATAGGCGCGTGC 327 >seq2293 Length=1342 Score = 107 bits (118), Expect = 2e-18 Identities = 245/366 (67%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 75471 ATCGCTTCGTTACGAAGGATTTTGTCGAATTCTTTAGCCGGATCGATATGCAGGTTACGC 75530 ||| ||||||| | ||| | || ||| | | ||||||||| | | ||||| Sbjct 1097 ATCTCTTCGTTGGTGACGATATCATCAAATACGATCGCCGGATCGTTGACGATATTACGG 1038 Query 75531 TGAATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTCGATCCAC 75590 |||||| |||||| || ||| || || || ||| | ||| ||||| | ||| Sbjct 1037 ATAATATGGGTATAAGAACGGGAGTGGATGGTCTCGGAGAATGACCAGGTTTCCACCCAG 978 Query 75591 GTTTCCA-TTGAAACATCAGAGGCAATCGGGAGAAACGCCAGGTTAGGGCCGCGTCCCTG 75649 ||||||| || || ||| | ||| | || |||| ||| |||| ||| ||||| Sbjct 977 GTTTCCAGTTCCGGGATT-GAGATCAGCGGCAACAAGGCCACGTTCGGGCTGCGGCCCTG 919 Query 75650 AATGGTATCTAACAGGGTTTGATATTGCAGGTTAGAATCAAAAATGATTTTTTCGTGTTC 75709 ||| | ||| ||||| || || |||| ||| || |||||| ||| || || || Sbjct 918 AATCGAATCCAACAGCGTCTGGTATTTCAGATTGCTGATGAAAATGTGTTTCTCATGATC 859 Query 75710 CGGCATTTTTGCATACTGCATACGGTCTATCGACAGATCCACTTCTTCCGGTCGCCAGAA 75769 ||||| | ||| | |||||||| || | || |||||||| || |||||||| Sbjct 858 CGGCAGTGCCTGATAGTCAATACGGTCGCGGGAGACGTCAACTTCTTCAGGACGCCAGAA 799 Query 75770 GAATGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCGATGTTTTTGTTCTTCATATCG 75829 ||| ||||| ||||| ||| ||| ||||||| | ||||||||| | || | || Sbjct 798 GAAAGACAGCTGTTTCTCAATCAGTTTTTCGAAAATTTCATGTTTTTGCTGATCGAAACG 739 Query 75830 GGCAAC 75835 ||||| Sbjct 738 CGCAAC 733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 258/393 (66%), Gaps = 11/393 (3%) Strand=Plus/Minus Query 75994 CTGCACCGTCGCGGGTGTTGTGATAATACAGAGTTTTCACGCCGTAGTAGTTCGCATAAA 76053 ||||||||||||||||||| ||||||||||| || || || || | | || | | Sbjct 513 CTGCACCGTCGCGGGTGTTCTGATAATACAGCGTCTTGACACCAAACTTGTAGGTGGTGA 454 Query 76054 GCAGGTCAT-CAATGATGGTTTCAGATTTCACTTTACCATCTGGGAAGTTAGCCGGATCA 76112 ||||||| | ||| | |||| | ||| || || | ||||| | ||||||| Sbjct 453 GCAGGTCTTTCAACAGCTGCTTCATAGG-CACCTTGCCGCCAGGGAAACGGGTCGGATCA 395 Query 76113 TAGTTGGTGTTTGCAGAGATCGCTTGATCAACAAACTTCTGCATAACAGCAACATGAGAC 76172 ||||||||||| ||||| |||| || || | ||| |||||||| | | | || | | Sbjct 394 TAGTTGGTGTTGGCAGAAATCGACTGGTCGATAAATTTCTGCATCAGACCGACCAGTTGC 335 Query 76173 AGATAACCTTTATTACCGCGTTTTGCCATTGTCCAGAGATAATCATAGAAATCAATCTGG 76232 || ||||| | || || | |||| ||| || || ||| | || | Sbjct 334 AGGTAACCGT------CGTTGTTCGGCATTTCCCACAGCAGTTCGTAGTCGTTTTTC-AG 282 Query 76233 TCGTTCTGGTTC-GGTACTACCTGGTTGAATGA-ACCTTCTTTCGAAGATTTCACACTCA 76290 || || ||| || ||||||||| || | ||| |||||||| | ||| | ||| | Sbjct 281 ACGCTCATATTCTGGCACTACCTGGCGCAAAAATACCGTCTTTCGACGCTTTGATACTGA 222 Query 76291 CAGGGCCGCGAGGCGGTTCAATCCCGTTTGTTGAGTTGCTTACTTGAGAACTACTCTCAC 76350 |||| || || || ||||| ||||| || | |||| | || ||| | || Sbjct 221 TGTGGCCACGTGGTGGCTCAATGCCGTTGGTGGCGTTGGAAATCTGCGAAGAGGTTTCCG 162 Query 76351 ATGGCATTAAAGCAGAAAGAGTTGAGTTACGCA 76383 | ||||| | || || || || |||||||||| Sbjct 161 AAGGCATCAGCGCTGACAGGGTGGAGTTACGCA 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568367998922880