Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30]
14,861 sequences; 67,701,403 total letters
Query= NC_029079.1
Length=75339
Score E
Sequences producing significant alignments: (Bits) Value
seq5757 120 1e-22
>seq5757
Length=557
Score = 120 bits (132), Expect = 1e-22
Identities = 323/488 (66%), Gaps = 11/488 (2%)
Strand=Plus/Minus
Query 66242 TGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 66301
||| | ||| || ||||| || | ||||| || | || || || ||| || || ||
Sbjct 542 TGCGTTCATTGATGCTGAACATGCGCTGGATCCGGTATATGCGAAAAAGCTGGGCGTTGA 483
Query 66302 CCTCGACAACCTCGTGGTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 66360
|||||||||| || || | |||||| || || || ||||| || |||| ||| ||
Sbjct 482 TATCGACAACCTGCTG-TGTTCTCAGCCAGATACGGGTGAGCAAGCATTGGAAATCTGTG 424
Query 66361 ACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGG 66420
|| | | | ||||||| | | | || |||||||||| || || || ||
Sbjct 423 ACGCCTTAACCCGCTCTGGCGCGGTTGATGTGATCATCGTTGACTCCGTAGCAGCGTTGA 364
Query 66421 TGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCC 66480
||| || || |||||||||| ||||| ||| ||| | |||||| || ||
Sbjct 363 CGCCAAAAGCAGAAATCGAAGGCGAAATCGGTGACTCACACATGGGCCTGGCGGCACGTA 304
Query 66481 TCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGC 66540
| ||| ||||| ||||| || || |||| | | | | | ||||||||||| |
Sbjct 303 TGATGAGCCAGGCAATGCGTAAACTGGCCGGTAACCTGAAAAACGCCAACACGCTGCTGA 244
Query 66541 TCTGGGTCAACCAGTTGCGCGAGAAGATCGG---CAACGTGGGCTACGGCCCGAACGAGA 66597
||| |||||||| | || |||||| || | | ||||| |||| || |
Sbjct 243 TCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGCTA--ACCCG---GAAA 189
Query 66598 CCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCA 66657
||||||| || || || || ||| ||||||||||| || || |||| ||||||| |
Sbjct 188 CCACCACCGGTGGTAACGCGCTGAAATTCTACGCCTCTGTTCGTCTGGACATCCGTCGTA 129
Query 66658 TCGCCACCGAGAAGGAA-GGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTC 66716
| | | | | ||| ||| ||||| | | || || | | ||||| ||||| || ||
Sbjct 128 TTGGCGCGGTGAAAGAAGGGCGAAAACGTGGTGGGTAGCGAAACCCGCGTGAAAGTGGTG 69
Query 66717 AAGAACAA 66724
||||||||
Sbjct 68 AAGAACAA 61
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 240916357701300
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |