Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq14564 147 2e-30 >seq14564 Length=527 Score = 147 bits (162), Expect = 2e-30 Identities = 194/267 (73%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 109128 CAAAACGATCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGA 109187 |||| | ||| | | || ||||| |||||||| || |||||||| ||||| |||| || Sbjct 263 CAAAGTGGTCGGCTCTTATTTTGTGGAATGGGGCGTATACGGCCGTAATTTCACCGTCGA 322 Query 109188 CAAAGTGCCGTTGCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGG 109247 || ||||| || || | |||||||||||||||| ||||| || || |||||||| Sbjct 323 TAAGCTGCCGGCGCAAAACCTGACGCATTTGCTGTACGGGTTTATCCCGATCTGTGGCGG 382 Query 109248 CGACGGCATCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATC 109307 || |||||||||||| || ||| || || || || | || ||||| || || Sbjct 383 TGATGGCATCAACGACAGTCTGAAAGAGATCGAAGGTAGCTTCCAGGCGTTGCAGCGTTC 442 Query 109308 GTGCCGCGGTCGCGACGATTTCAAAGTGTCCATACACGA--CATTTGGGCCGCGGTGCAA 109365 |||| || || || || || |||||||| || ||||| | ||| |||||| |||| Sbjct 443 CTGCCAGGGCCGTGAGGACTTTAAAGTGTCAATCCACGATCCGTTT--GCCGCGTTGCAG 500 Query 109366 AAACCGCAAAAAGGCGTGACCGCGTGG 109392 ||| ||||| ||||| ||||| ||| Sbjct 501 AAAGGCCAAAAGGGCGTTACCGCCTGG 527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409586602875999