Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq6576 235 8e-57 seq1309 120 4e-22 >seq6576 Length=1118 Score = 235 bits (260), Expect = 8e-57 Identities = 378/535 (71%), Gaps = 6/535 (1%) Strand=Plus/Minus Query 88196 CCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCCACCGCCTACGCGGTAGA-GCGA 88254 |||| || |||||||| ||||| || || || || | | || | |||| ||| || Sbjct 970 CCACCGGTGAAGCCGGCTGCGGCAAAACATTTATCAGCGCTGCGAAAGCGGCAGAAGCCC 911 Query 88255 TTACTGGCCAAAGACGTCGATCGTATCATTGTCACTCGCCCTGTCCTCTCCGCAGATGAA 88314 ||| | ||||| || ||||| || ||||| ||||| || || | || |||||| Sbjct 910 TTA-TACATAAAGAAGTGGATCGGATTATTGTTACTCGTCCGGTTTTGCAGGCGGATGAA 852 Query 88315 GACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAAGTTCGCGCCTTACTTCCGACCTGTT 88374 ||| | || ||| | || || || || ||| |||||||| ||||| ||||| || || Sbjct 851 GACCTCGGTTTCTTACCCGGGGACATTTCTGAGAAGTTCGCCCCTTATTTCCGTCCGGTG 792 Query 88375 TACGATGTGCTCTTAAAACGTCTGGGCA-GCCGTTTCTTACAATACTGCCTGAAACCGGG 88433 || || | || | ||| | || | | ||| | |||||||||||| |||| Sbjct 791 TATGACATTCTGGTGCGCCGTTTAGGATCGTCCTTTATG-CAATACTGCCTGCGTCCGGA 733 Query 88434 TATAGACAAGGTTGAGATAGCTCCCTTCGCCTATATGCGTGGCCGCAACTTCGAGAACGC 88493 || | |||||| ||||| || || |||||||| ||||| || || | |||||| || || Sbjct 732 AATCGGCAAGGTAGAGATCGCGCCTTTCGCCTACATGCGCGGGCGTACCTTCGAAAATGC 673 Query 88494 GGTCGTTATCTTAGATGAAGCTCAGAACACCACTGCTCAGC-AGATGAAGCTCTTCCTGA 88552 ||| |||||| | |||||||| |||||| || || |||| | |||||| | ||||||| Sbjct 672 GGTAGTTATCCTGGATGAAGCCCAGAACGTTACCGC-CAGCCAAATGAAGATGTTCCTGA 614 Query 88553 CCCGTATCGGGGAGAACTGTATCGTTATCGTTAACGGTGACGTCACTCAGTGCGACTTAC 88612 ||||| | || |||||| | || ||||| || |||||| | || ||||||||||| | Sbjct 613 CCCGTTTGGGTGAGAACGTCACGGTAATCGTCAATGGTGACATAACCCAGTGCGACTTGC 554 Query 88613 CTTCCGGGGTGAAGTCGGGACTGGCCGACGCATTAGCCCGTTTCGAAGAAGACGAATTAG 88672 | ||| |||||||| || || |||||| | | || |||||||| || ||| | Sbjct 553 CGCGCGGCGTGAAGTCCGGCCTCAGCGACGCGATGGAGCGCTTCGAAGAGGATGAAATGA 494 Query 88673 TCGGCATCGTTCGTTTTACGAAAGATGACTGTGTGCGCTCTCCGCTTTGTCAGCG 88727 | |||||| | || ||| ||| | ||||| || ||||| | || || ||||| Sbjct 493 TTGGCATCATCCGCTTTGATAAACAAGACTGCGTCCGCTCCGCCCTGTGCCAGCG 439 >seq1309 Length=710 Score = 120 bits (132), Expect = 4e-22 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 99965 GTGGGTGATTTCGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAA 100024 |||||||||||||| ||| | |||| ||| ||||||||||| || ||| |||||||| Sbjct 703 GTGGGTGATTTCGTTTGGAC--GTGGCGACACACATCTGTACAGCAATCATATGGAACAA 646 Query 100025 ACCCGTACCCAGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAG 100084 |||| || || || | ||||| |||| ||||||||| | |||||||| || Sbjct 645 ACCCAGCTACAATTGACCCGCGAACCGCGCGCGTTGCCTAAGCTGGTGATCAAACGCAAA 586 Query 100085 CCAGACTCCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCAT 100144 || | || | ||||| || || || || || ||| | ||||| ||||| ||||| Sbjct 585 CCGGCATCGCTGTTCGATTACCGTTTCGAGGATTTTGAAATCGAAGGTTACGATCCGCAC 526 Query 100145 CCTGCAATCAAAGCACCGGTCGCGATATGA 100174 || || ||||| |||||||| || || ||| Sbjct 525 CCAGCCATCAAGGCACCGGTTGCCATTTGA 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716330907856200