Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq10212 127 5e-25 >seq10212 Length=656 Score = 127 bits (140), Expect = 5e-25 Identities = 352/529 (67%), Gaps = 18/529 (3%) Strand=Plus/Minus Query 31188 TGCATGTCTATCTGCTGCCACTCCAGATTGATAATGTTAGACCGCCTTAAGCCAGTAGAA 31247 ||||| || || ||| ||| | || | |||||||||||| || | | |||||| | Sbjct 654 TGCATATCGATTTGCGACCAGGCAAGTTCGATAATGTTAGAGCGACGGAGGCCAGTGGTT 595 Query 31248 AGCGCAAACTCTACGACTGACTTTAGCGGTTCCTGGCATTCATCAATCAACCTTTTTGCC 31307 || ||||| || ||| || || || ||||| |||| ||||| | || | || |||| Sbjct 594 AGTGCAAATTCAACGGTAGATTTAAGAGGTTCTGGGCACTCATCTACTAAGCGTTGTGCC 535 Query 31308 TCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTCGGCTGAGGAACTTTGATGATCGGA 31367 | || || ||||| || | ||||| ||| | ||| || || ||||| | || Sbjct 534 TGAGCGGGTTCGAGCCACCGAACTCGCTTGTTTCTTTCCTGCGGCACCTTGATCACTGGT 475 Query 31368 GCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCCCGGAGGAGTGCCTTAATGAATAAA 31427 | ||| || | | |||||| || | ||| |||||||| | || ||||| || || | Sbjct 474 GACTTTTCTATCCACTTCCAATCCCTTTCCGCAGCCCGCATAAGAGCCTTCATCAAAGCA 415 Query 31428 AGGTGAGTTGCTTTTGTAGCTACTGCTGCCGGCTTAGGCTTGAATACCGGAGGCTGCT-- 31485 ||||| | || ||||| | || | | || || || | ||| || | Sbjct 414 AGGTGCTTAGCCTTTGTTGAAGTTGAAACGGCCTCAGATTT---TCGCGGCGGTATCACA 358 Query 31486 -TCCCATTCTT--CC--TGCAAGCTTCATCCATTAACTTCCAGTTTTCCTCATGCCG-CC 31539 | || ||||| || |||| | || |||| | |||| ||||| |||| || Sbjct 357 ATGCCTTTCTTAGCCATTGCAT-CAACACGCATT---TGCCAGCGCTCCTC-TGCCTTCC 303 Query 31540 GATTAGTTAT-CTTCTGGATGGCGGAGTAAATCTTCGTCTCGGTAATATCCTTCAACTGC 31598 ||| || || | || || ||| ||| || || | |||||| ||||||||||| Sbjct 302 TATTGGTCATGCGGCTAACTG-CGGTGTAGATTTTTGCCTCGGTTATATCCTTCAATAAA 244 Query 31599 ATTCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTTGTCATCATCCAGCGACTTC 31658 | || |||||||| |||||||||||| ||||| | |||||| |||| || || ||| Sbjct 243 ACCCCCTCAAAATGCATGAGCCAGAATCCAATCCGGCCCTTGTCTGCATCGAGTGATTTC 184 Query 31659 TTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCCCCTCAAAAGTCA 31707 || ||||| || || |||||||| | | || ||| | ||||| |||| Sbjct 183 TTGTGCGCTTTTTCTTCTAACCAGCGCAGGCAAGCCTCTTCAAATGTCA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133643611164422