Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq6576 242 5e-59 >seq6576 Length=1118 Score = 242 bits (268), Expect = 5e-59 Identities = 389/551 (71%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 88150 AAACAACTGATATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCC 88209 ||||| |||| || |||||||||||||| || ||||| |||||||| | |||| || Sbjct 986 AAACAGTTGATTTTTGCCACCGGTGAAGCCGGCTGCGGCAAAACATTTATCAGCGCTGCG 927 Query 88210 TACGCTGCCGAACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTC 88269 | || || ||| || | ||||| | || || || ||||| || ||||| || Sbjct 926 AAAGCGGCAGAAGCCCTTATACATAAAGAAGTGGATCGGATTATTGTTACTCGTCCGGTT 867 Query 88270 CTCTCTGCAGATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCT 88329 | || ||||||||||| || ||||| ||||| ||| | || ||||||||||||||| Sbjct 866 TTGCAGGCGGATGAAGACCTCGGTTTCTTACCCGGGGACATTTCTGAGAAGTTCGCCCCT 807 Query 88330 TACTTCCGTCCTGTCTACGACGTGCTAAGCAAACGCTTAGG-TGGTCAATTCTTACGCTA 88388 || |||||||| || || ||| | || || ||||| | ||| || | | || Sbjct 806 TATTTCCGTCCGGTGTATGACATTCTGGTGCGCCGTTTAGGATCGTCCTTTATG-CAATA 748 Query 88389 CTGTTTAAAGCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACG 88448 ||| | |||| ||| | |||||||||||| || || ||||||||||||||||| || Sbjct 747 CTGCCTGCGTCCGGAAATCGGCAAGGTAGAGATCGCGCCTTTCGCCTACATGCGCGGGCG 688 Query 88449 TAGCTTTGAAAATGCAGTCATTTTATTAGATGAAGCTCAGAACACTACTGCTCAGC-AGA 88507 || ||| |||||||| || || | | |||||||| |||||| ||| || |||| | | Sbjct 687 TACCTTCGAAAATGCGGTAGTTATCCTGGATGAAGCCCAGAACGTTACCGC-CAGCCAAA 629 Query 88508 TGAAGCTCTTCCTGACACGTATCGGGGAGAACTGTCTCG-TGATTGTCAATGGCGATATT 88566 ||||| | |||||||| ||| | || |||||| ||| || | || |||||||| || || Sbjct 628 TGAAGATGTTCCTGACCCGTTTGGGTGAGAAC-GTCACGGTAATCGTCAATGGTGACATA 570 Query 88567 ACTCAGTGCGACTTACCGAAAGGGGTACGTTCTGGGCTGGCCGATGCGCTAACGCGTTTT 88626 || ||||||||||| ||| || || || || || ||| ||| | ||| || Sbjct 569 ACCCAGTGCGACTTGCCGCGCGGCGTGAAGTCCGGCCTCAGCGACGCGATGGAGCGCTTC 510 Query 88627 GACACTGACGACTTAGTTAGCGTTATTCACTTTGTGAAAGACGACTGTGTACGCTCCGAG 88686 || || || | || || | || | ||||| ||| | ||||| || ||||||| Sbjct 509 GAAGAGGATGAAATGATTGGCATCATCCGCTTTGATAAACAAGACTGCGTCCGCTCCGCC 450 Query 88687 CTTTGTCAACG 88697 || || || || Sbjct 449 CTGTGCCAGCG 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734138799203160