Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq4204 118 1e-21 seq2293 105 8e-18 >seq4204 Length=800 Score = 118 bits (130), Expect = 1e-21 Identities = 212/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 155822 AACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 155880 ||||| || || || |||||| |||||| | |||| || |||||||| ||| |||| || Sbjct 438 AACGAAAATGCCAATAAAGACAGCAAGG-TGATCCCCACCCAGCGCGACCTGCTGGCCGG 496 Query 155881 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 155940 ||||| || || || | ||| | || || || ||| || | || || || Sbjct 497 GATCGTCGCCAAGCATTACGCCAAACAGCATATCCTGCCACGTGACGTGGTGCTGGCCCA 556 Query 155941 TGATTCT-GGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACA 155998 || | || || ||||| || || ||||| |||||| || ||| || || || Sbjct 557 CGAAGCGCGGCGAGATCCACTACCACGATCTCGATTACTCGCCCTTCTTCCCTATGTTCA 616 Query 155999 AACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCA 156058 | |||| ||| | ||||||||||| |||||| | || |||||||| |||||||| || Sbjct 617 A-CTGCATGCTGATCGATTTGAAAGGCATGCTGACCAACGGCTTCAAAATGGGTAATGCC 675 Query 156059 GACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCA 156118 || |||||||| ||||| || ||| ||||| || | | |||||||||| |||| Sbjct 676 GAGATCGAACCACCGAAGTCGATCTCCACCGCGACCGCCGTCACCGCACAGATCATCGCA 735 Query 156119 CAG 156121 ||| Sbjct 736 CAG 738 >seq2293 Length=1342 Score = 105 bits (116), Expect = 8e-18 Identities = 212/312 (68%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 45145 GTTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTG 45204 ||||| || | || | ||||||||| | ||||||| ||| ||| ||||| ||| Sbjct 733 GTTGCGCGTTTCGATCAGCAAAAACATGAAATTTTCGAAAAACTGATTGAGAAACAGCTG 792 Query 45205 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAA 45264 || ||||||||||| || |||||||| || | || ||||||||| | ||| | Sbjct 793 TCTTTCTTCTGGCGTCCTGAAGAAGTTGACGTCTCCCGCGACCGTATTGACTATCAGGCA 852 Query 45265 ATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGAT 45324 ||||||| || |||||| |||||| || ||| |||| || || ||||| ||| Sbjct 853 CTGCCGGATCATGAGAAACACATTTTCATCAGCAATCTGAAATACCAGACGCTGTTGGAT 912 Query 45325 ACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAA-T 45383 | |||||||| || |||| ||| |||| || | ||| | ||| || || | Sbjct 913 TCGATTCAGGGCCGCAGCCCGAACGTGGCCTTGTTGCCGCTGATCTC-AATCCCGGAACT 971 Query 45384 GGAAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCATAGCCGCAGTTATACACA 45443 |||||| ||| | ||||| ||| | ||| || || || || ||| |||||| || Sbjct 972 GGAAACCTGGGTGGAAACCTGGTCATTCTCCGAGACCATCCACTCCCGTTCTTATACCCA 1031 Query 45444 CATTCAGCGTAA 45455 ||| ||||| Sbjct 1032 TATTATCCGTAA 1043 Score = 84.2 bits (92), Expect = 3e-11 Identities = 258/393 (66%), Gaps = 11/393 (3%) Strand=Plus/Plus Query 44597 TGCGTAACTCAACTCTTTCCGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACT 44656 |||||||||| || || || || | ||||| | || | ||| || | |||| Sbjct 129 TGCGTAACTCCACCCTGTCAGCGCTGATGCCTTCGGAAACCTCTTCGCAGATTTCCAACG 188 Query 44657 CAACAAACGGGATTGAACCGCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGT- 44715 | || ||||| ||||| || || || || | | ||| | ||| | |||||||| ||| Sbjct 189 CCACCAACGGCATTGAGCCACCACGTGGCCACATCAGTATCAAAGCGTCGAAAGACGGTA 248 Query 44716 TCATTCAACCAGGTAGTACC-GAACCAGAACGATCAGATTGATTTCTATGATTATCTCTG 44774 | || ||||||||| || ||| || || || || | ||| || || || Sbjct 249 TTTTTGCGCCAGGTAGTGCCAGAATATGAGCG-TCTGAAAAACGACTACGAACTGCTGTG 307 Query 44775 GACAATGGCAAAACGCGGTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTT 44834 | |||| | || || | ||||| ||| | || | | | |||||||| || Sbjct 308 GGAAATGCCGAACAACG------ACGGTTACCTGCAACTGGTCGGTCTGATGCAGAAATT 361 Query 44835 TGTTGATCAAGCGATCTCTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAA 44894 | | || || |||| ||||| |||||||||||||||||| | ||||| | || || Sbjct 362 TATCGACCAGTCGATTTCTGCCAACACCAACTATGATCCGACCCGTTTCCCTGGCGGCAA 421 Query 44895 AGTGAAATCTGAAACCATCATTG-ATGACCTGCTTTATGCGAACTACTACGGCGTGAAAA 44953 ||| | |||| | ||| | |||||||| | || | | || || || | Sbjct 422 GGTG-CCTATGAAGCAGCTGTTGAAAGACCTGCTCACCACCTACAAGTTTGGTGTCAAGA 480 Query 44954 CTCTGTATTATCACAACACCCGCGACGGTGCAG 44986 | ||||||||||| ||||||||||||||||||| Sbjct 481 CGCTGTATTATCAGAACACCCGCGACGGTGCAG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576465694395240