Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq2366 156 1e-33 >seq2366 Length=702 Score = 156 bits (172), Expect = 1e-33 Identities = 205/283 (72%), Gaps = 1/283 (0%) Strand=Plus/Minus Query 350 TTATGTGTTGCTTCGTCTGGTGGAAATCGACCAGATGGATGTGCTGGATATCCTGAACGA 409 |||||| |||| || |||| |||||||| ||||||||||| |||| || ||||| || Sbjct 413 TTATGTTTTGCGACGCTTGGTTGAAATCGATCAGATGGATGTATTGGACATTCTGAAAGA 354 Query 410 TGACGGCACCCTGAAGCCGATCCGCCAGTGGCCGAAGATATGGCGTACCACGC-TGAGCG 468 ||||||| ||| ||| |||| | | ||||| ||| | |||||||| |||| | |||| Sbjct 353 TGACGGCGGCCTCAAGGCGATAAGTGAATGGCCTAAGGTGTGGCGTACAACGCTTAAGCG 294 Query 469 GTTTCGACCTGTCATCGACCATCATGAACATGGATGAGACATCAATCGAGACCATCCTCA 528 | |||||| | | | |||| || | || || || | || |||| |||||||| Sbjct 293 GATTCGACATAAATACTTCAATCACTAATTTTGACGAAACCACCATTGAGAGCATCCTCA 234 Query 529 AGAAAATAAAATGGCCTGACAAGGTGAAGAACCTCGAACTCATTGGTAAGCACGTCGACA 588 | ||| |||||||||| || ||||| ||||| |||||||| | || ||||| | | Sbjct 233 AAAAAGTAAAATGGCCGGATAAGGTCAAGAATCTCGAACTGCTCGGCAAGCATATATCCG 174 Query 589 TCAACGCTTTCAAAGAGCGCCTGGAGGTTTCAGGTACTGTCAC 631 ||| || ||||||||| | | ||| ||||| |||| || Sbjct 173 TCATGGCATTCAAAGAGAACATTGAGCAATCAGGCTCTGTAAC 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133486838835604