Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq3417 93.3 1e-14 seq3694 87.8 6e-13 >seq3417 Length=361 Score = 93.3 bits (102), Expect = 1e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40239 ATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCA 40298 || ||||| ||||| |||||| || ||||||||||||| || ||| ||||||| Sbjct 339 ATCGGGTCGAGGTCGGTGATGGTCAGCACCCAGGCGACCAGCGAGCCCGCACCCGAGCCG 280 Query 40299 CGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACC 40358 || || ||||||||| | ||| | | |||| ||||| ||||||||| | |||| | Sbjct 279 CGGCCCGGTCCGACCGGAATGCCCTGCGCCTTCGCCCATTTGATGAAGTCCGACACGATC 220 Query 40359 AGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTG 40418 || |||||| || | | || || |||| | ||||| |||| | |||| ||||| Sbjct 219 AGAAAGTAGCCCGCGTATTTCATGCGGGTGATGACGTCGAGCTCGAAGGCAAGCCGCTTG 160 Query 40419 C 40419 | Sbjct 159 C 159 >seq3694 Length=227 Score = 87.8 bits (96), Expect = 6e-13 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 40029 GGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAG 40088 ||| | | |||||||||| | |||| || | || |||||||| | | |||||| Sbjct 222 GGCATCTGCAGCACGCGCCCGACGTCGCGCAGCACGCCGCGCGCCTGCAGCGTTCCGAAG 163 Query 40089 GTCCCGATCTGTGC-GACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACGTC 40147 || |||||| || ||||| || ||||| ||| |||||| |||||| || Sbjct 162 GTGATGATCTGCGCCGACCTGATCGCGGCCGTAGCGCTCCTGCACGTACG-GATCACCTC 104 Query 40148 GCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGG 40205 ||| || || || | || |||||||||||| | ||| ||||| || ||||| || || Sbjct 103 GCCGCGGCGGTCCTGACA--GAAGTCGATGTCGAAGTCCGGCATCGAGACGCGTTCCGGA 46 Query 40206 TTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGG 40250 || ||||| |||||||| | || ||| | |||| || || ||| Sbjct 45 TTGAGGAAGCGCTCGAACAGCAGACCGAACCGGATCGGATCGAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160112539252408