Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq7581 132 1e-26 >seq7581 Length=813 Score = 132 bits (146), Expect = 1e-26 Identities = 372/560 (66%), Gaps = 16/560 (3%) Strand=Plus/Minus Query 9775 CGAACTGCCCAGCTACGGTTACCGCCGTGTTTGGGGATTGCTGCGCCGCGCGC--GCGAA 9832 ||| ||||||| ||||||||| ||||| || | | ||||||||| | || | Sbjct 718 CGATCTGCCCACCTACGGTTATCGCCGGGTCCACGCCCTTCTGCGCCGCCAGGCTGCCAG 659 Query 9833 AAGCAGTCGCTGCCCGCGATCAACGTAAAACGGGTTTACCGAGTCATGCGTGATCACAAC 9892 | | | ||| | ||| ||| || ||||| ||||| |||||| | ||| Sbjct 658 GATCGGGCGCA--CAGCGCCCAATCCCAAGCGGGTCTACCGGGTCATGAAGGTGCACGGG 601 Query 9893 CTGCTGCTTGAGCGGCGCATCAAGCAGCCCGGCGTACCGCGCCGGCATGAAGGCCGTATC 9952 ||||||||| |||| | || | |||||| || | | ||| || ||||| || || | Sbjct 600 CTGCTGCTTCAGCGCCACAACG-GCAGCCGGGAGGA--GCGGCGCCATGATGGTCGCGTT 544 Query 9953 GCCGTTAACACCAGCGACACGCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGAC 10012 ||||| | || |||| ||||||||||| || | ||| || || |||||| | Sbjct 543 GCCGTCGATCGGCGCAACACCCGCTGGTGCTCTGACGCCTTGGAGATCGCTTGCGACAAT 484 Query 10013 GGTGCGAAACTGAGCGTGACCTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGG 10072 || | || || |||| ||||||| || ||||||||||| ||||| ||||| || Sbjct 483 GGCGAAAAGGTGCGCGTCGCCTTTGCACTCGACTGCTGTGACCGCGAGGCCATGGGGCAC 424 Query 10073 GTGGCCAGCCCGACCGGCTACAGCGGCGATGACATACGCGACTTGATGCTGGAAAGCGTG 10132 || || | | | |||| || || ||| ||||| || || ||||| | | | || Sbjct 423 GTTGCTACCACCGGCGGCATCACCGCCGAGGACATCCGTGATCTGATGGTCGCCACTGTC 364 Query 10133 GAGAAGCGTTTTGG--CGACCTACTGC-CGACCACACCGGTGCAATGGCTAAGCGATAAC 10189 ||| | || ||||| || || || | || | || | ||||||| ||||||||| Sbjct 363 GAGCATCGCTTTGGCCCGGTGAACCGCTTGGCCTCGCCCATTGAATGGCTCAGCGATAAC 304 Query 10190 GGTTCGGCC--TACATCGCTGAACAGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGC 10247 || | ||| ||| | ||| | | || |||| || || || | || ||||| | Sbjct 303 GG--CAGCCCTTACGTTGCTCACGATACTCGCCGCTTCGCGCGCGACATCGGCCTCGTAC 246 Query 10248 CAGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGC-TTCGTTAAG 10306 | ||||||||||| || ||||| ||||||||||| || ||| ||||| Sbjct 245 CCCGCACCACGCCGGTCAGCTCTCCGCAATCGAACGGCATGGCCGA-AGCTTTCGTGCGC 187 Query 10307 ACAATCAAGCGCGACTACGT 10326 || |||||||||||||||| Sbjct 186 ACCCTCAAGCGCGACTACGT 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138340382158398