Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq1309 140 5e-28 seq14546 96.9 5e-15 >seq1309 Length=710 Score = 140 bits (154), Expect = 5e-28 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 196862 GGGTGATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 |||||||||||| |||||| | |||| || ||||||||| || ||| ||||||| | Sbjct 701 GGGTGATTTCGTTTGGACGTG--GCGACACACATCTGTACAGCAATCATATGGAACAAAC 644 Query 196922 CACGTTGCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACC 196981 | | | || | |||| | ||||| | |||||||||| || |||||||| ||||| Sbjct 643 CCAGCTACAATTGACCCGCGAACCGCGCGCGTTGCCTAAGCTGGTGATCAAACGCAAACC 584 Query 196982 GGATTCCATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCC 197041 || || | ||||| || ||||| ||||||||||||| |||||||| ||||| Sbjct 583 GGCATCGCTGTTCGATTACCGTTTCGAGGATTTTGAAATCGAAGGTTACGATCCGCACCC 524 Query 197042 ACCCATTAAGGCACCGGTTGCCAT 197065 | |||| ||||||||||||||||| Sbjct 523 AGCCATCAAGGCACCGGTTGCCAT 500 >seq14546 Length=505 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 261 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 202 Query 5547 TGCCAGAGTCGCCACATT 5564 | ||||| |||| ||| Sbjct 201 AGTCAGAGGAGCCATATT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770164105808760