Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq5523 190 1e-43 seq10216 161 7e-35 seq8174 118 7e-22 seq12791 91.5 1e-13 >seq5523 Length=1566 Score = 190 bits (210), Expect = 1e-43 Identities = 307/433 (71%), Gaps = 9/433 (2%) Strand=Plus/Plus Query 59127 ACAGCTTGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCAGGTGCA 59186 ||||||| | ||| ||| || | ||||||||| ||| || || ||||| |||| Sbjct 116 ACAGCTTCTTGTCGTGGAGATCCCTGATGCGCGGACAGAACGCAAATCCCAGCAGATGCA 175 Query 59187 TCAGGGCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCA 59246 | ||||||||||| ||||||||||| || || || |||||||| |||||| ||| || Sbjct 176 TAAGGGCAAAGACATGATCGGTGAAACCCGCAGTATCGGTGTAATGCTCCCTGATTTCCA 235 Query 59247 GGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGCGGACGCCGACAT 59306 |||| |||||||| |||| ||| || ||||||| ||| ||||| | ||| ||||| Sbjct 236 GGTCACTTTCGTGGTATAGCAAGCCATCTAGCACATGGGTTGAATCCCTGAC-CCGAC-- 292 Query 59307 TCACCACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGTC 59366 | | | || |||| || || ||| || || || ||||||||||| ||| | |||| Sbjct 293 TGATTATGCAGGTGTAAAATGGACTGTATTGATCAGAAATATGGGTATAAAACTGACGTC 352 Query 59367 CCGGCTCGCTACCGTACTTCGGGTTGACGTGCCCGGTGCTCTCGCCCCG-GCCACCCGCG 59425 | ||||| || || || ||||| || ||||| | | | || || | || || | Sbjct 353 CGGGCTCCTGCCCATATTTTGGGTTAACCTGCCCTGCG-TAGCGGCCTGAGCTGCCTGTT 411 Query 59426 CGGAAGCGCTGGCCATCGGAGGATGAGGTCGTGCCGTCGCCCCAG-TGGGCGGCAAAGG- 59483 | ||| ||| ||||| || ||||| || || ||||| |||||| || || || Sbjct 412 CTGAAATTCTGTCCATCTGATGATGACGTTGTCCCGTCTCCCCAGAATACCGTCAGTGGT 471 Query 59484 CGTGGCGATACTGGTGGTTGACCAGCTCGGCCAAGGCCGCCGAATAGGTTTCGTCGCGGA 59543 | | | ||| ||| |||||||| || | ||| || ||||||||||||||||||| Sbjct 472 CTTTTC--CCCTGCGCGTTTACCAGCTCTGCGAGGGCGGCTGAATAGGTTTCGTCGCGGA 529 Query 59544 TGTGCCAGGCTTG 59556 ||| ||| || || Sbjct 530 TGTACCATGCCTG 542 >seq10216 Length=730 Score = 161 bits (178), Expect = 7e-35 Identities = 303/442 (69%), Gaps = 14/442 (3%) Strand=Plus/Plus Query 58583 TAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACA---GGAATTGCAGCAGC 58639 |||||||| || || |||||||| |||||||| ||||| |||| | | |||| || Sbjct 295 TAATCGCCTGTCAGATTGATGTGTTCCCAGCCTAGCGGGGACAAATGCGACAGCAGTTGC 354 Query 58640 TCGCCG---TCCACCGGCTTGCCGGCCTC-GACCAACCCCTGGGTGGCGCGTTCCAGGTA 58695 ||| | | ||| ||| | || || || || | | | | | ||||| || Sbjct 355 TCGTTGATCTTCACTCCCTTAC--GCTTCAGAGCATCGACCG-----CTCTTTCCATATA 407 Query 58696 CACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCG 58755 || || |||||||| || || || |||| || | || || ||||| || |||| Sbjct 408 TACGGTATTCCACAGGGATATGGCAGCTGTCAGAAGCGTCAGTCCACTGGCGCGATAGCT 467 Query 58756 CTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGC 58815 ||| | || | || ||||||||||| || || |||| | || ||||| | || Sbjct 468 CTGATTTTCCGGTTTTCGGTCCCTGATTTCTCCCAGCCGGTGCATAAATACCGCTCGCGC 527 Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875 ||||| ||| || || |||||||| ||||| || || || || || || |||||| || Sbjct 528 CAGCGCGTTACGGGCTTCACCTTTATTCAGCCCCGCCTGTACCCGCCGACGCAGTGCAGG 587 Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935 | | | |||||| || || |||||||| || || || ||||| | || | || || Sbjct 588 ATCGCGGAACCAGTCGAGCATAAACAGCGTTCGTTCAATACGGCCAATTTCCCTCAATGC 647 Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGT 58995 ||| |||||||| || ||||||||| | ||||| ||||||||| || || || Sbjct 648 TTTGGCTAGTCCGTTTTGTTTGGGGTAGCTGGCAAGCTTTTTCAGCATCAGGGAAGCCGT 707 Query 58996 GACGGTGCCCTGCTTGATCGAG 59017 ||||| |||||||| |||||| Sbjct 708 CACGGTTCCCTGCTTTATCGAG 729 >seq8174 Length=252 Score = 118 bits (130), Expect = 7e-22 Identities = 168/229 (73%), Gaps = 12/229 (5%) Strand=Plus/Plus Query 58783 TTCCCCAAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTT 58842 ||| || ||||||||||| || | || | ||| |||| ||||| || ||||| ||||| Sbjct 21 TTCGCCGAGGCGGTTGAAAAAGATGGCGCGGGCGAGCGCATTGCGGGCTTCACCCTTGTT 80 Query 58843 CAGGCCGGCATGCACG--CGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAAC 58900 ||| | ||| | || || ||| |||| | | | | |||||| || |||||| Sbjct 81 GAGGATGC--TGCCGGTGCGACGCCGCTGTTCGGGATTGTTGAACCAGTCGAGCATGAAC 138 Query 58901 AGCGTGCGCTCGATCCGGCCCAGCTCGCGCA--GGGCCA-CGGCCAGTCCGTTCTGGCGC 58957 || |||||||||||||| || |||||||||| | || | || || | ||| || ||| Sbjct 139 AGGGTGCGCTCGATCCGCCCGAGCTCGCGCAATGCGCGAGCGACCGG---GTTTTGACGC 195 Query 58958 GG-GTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCC 59005 || | ||||| |||||||||||||| | ||| ||| ||||||||||| Sbjct 196 GGAAAACCTGCC-AGCTTGCGCAGCATGACCGACGCGCTGACGGTGCCC 243 >seq12791 Length=296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 59143 GAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCAGGT-GCATCAGGGCAAAGACGT 59201 |||||| ||||| ||||| |||||||||||||| ||||||| |||| ||| | || |||| Sbjct 176 GAGGTCACGGATACGCGGTGCGAAGCGGAAGCCGAGCAGGTGGCAT-AGGCCGAAAACGT 118 Query 59202 GATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCGGACTCGTGGT 59261 ||||| ||||| ||||||||| || || ||| ||| ||| ||| |||| Sbjct 117 GATCGACCGCCCCGGCGGTGTCGGTGGCATGTTCGCGGATTACCAGCTCGCTCTCATGGT 58 Query 59262 ACAGCAGGCCGTCGAGCAC 59280 |||||||| ||||| || Sbjct 57 CGAGCAGGCCATCGAGGAC 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330839268053926