Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14857 131 4e-25 seq14858 104 5e-17 >seq14857 Length=2032611 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || || || ||||||||||| |||| | ||||| || || || | Sbjct 1173536 CAAG-TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGA 1173478 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | || ||||| ||||| || |||| Sbjct 1173477 GCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAA 1173418 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| ||| || || | ||| || || |||| Sbjct 1173417 TCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGC 1173358 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 | ||||| ||||||||||| | ||||||||| || Sbjct 1173357 CGGTGAGCGTCTTCACGAAAATCTGCATTTTGCC 1173324 >seq14858 Length=1827956 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| || | | ||||| || ||||| | Sbjct 1581120 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCCA 1581062 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 1581061 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 1581002 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || ||||| || || || || | Sbjct 1581001 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTC 1580942 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 1580941 CGGTAAGAGTCTTCACAAAGATCTGCATT 1580913 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| || | | ||||| || || || | Sbjct 1581644 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCA 1581586 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 1581585 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 1581526 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || ||||| || ||||| || | Sbjct 1581525 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTC 1581466 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 1581465 CGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| || | | ||||| || || || | Sbjct 1580263 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCA 1580205 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 1580204 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 1580145 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || ||||| || || || || | Sbjct 1580144 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTC 1580085 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || ||||||||||| |||| ||||||||| Sbjct 1580084 CGGTAAGAGTCTTCACAAAGATCTGCATTTT 1580054 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| || | | ||||| || || || | Sbjct 1580892 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCA 1580834 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || || | |||||| || | | || |||||||| || || | Sbjct 1580833 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 1580774 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || ||| |||| | | ||||||| ||| || ||||| || || || || | Sbjct 1580773 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTC 1580714 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || ||||||||||| |||| ||||||| Sbjct 1580713 CGGTAAGAGTCTTCACAAAGATCTGCATT 1580685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153601104947731