Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq14857 158 3e-33 seq14858 143 6e-29 seq1739 123 5e-23 seq11655 102 2e-16 >seq14857 Length=2032611 Score = 158 bits (174), Expect = 3e-33 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | ||| || | ||| ||||| || || || || || || Sbjct 1173521 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCTGCGAA 1173462 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| ||| || |||||| |||||| |||||||| || || ||||| || || || | Sbjct 1173461 GATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTGACATT 1173402 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| ||||| || | |||||||||||| || || | ||||| || Sbjct 1173401 TTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTCTTCAC 1173342 Query 283088 GAATATCTGCATTTT 283102 ||| ||||||||||| Sbjct 1173341 GAAAATCTGCATTTT 1173327 >seq14858 Length=1827956 Score = 143 bits (158), Expect = 6e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| || || ||||| ||||| | || || || ||||| Sbjct 1580247 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 1580188 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| |||||||| |||||||| ||||||||||| || || | Sbjct 1580187 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 1580128 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||| ||||| || || | |||||| || Sbjct 1580127 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACA 1580068 Query 283089 AATATCTGCATTTT 283102 || ||||||||||| Sbjct 1580067 AAGATCTGCATTTT 1580054 Score = 143 bits (158), Expect = 6e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | |||| || | || || || || ||||||||||||| Sbjct 1581665 ACCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGA 1581606 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| | || || || ||||| |||| ||| || || ||| || Sbjct 1581605 CAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGG 1581546 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||||||||| || || | ||||| ||||| || | || || Sbjct 1581545 AATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAAC 1581486 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || || | |||||| || || ||||||||| Sbjct 1581485 ATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1581437 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| || || ||||| ||||| | || || || ||||| Sbjct 1580876 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 1580817 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| |||||||| |||||||| ||||||||||| || || | Sbjct 1580816 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 1580757 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||| ||||| || || | |||||| || Sbjct 1580756 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACA 1580697 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 1580696 AAGATCTGCATT 1580685 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| || || ||||| || || | || || || ||||| Sbjct 1581104 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCTTCCAACTGCTTGCCAGCAAAA 1581045 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| |||||||| |||||||| ||||||||||| || || | Sbjct 1581044 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 1580985 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||| ||||| || || | |||||| || Sbjct 1580984 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACA 1580925 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 1580924 AAGATCTGCATT 1580913 Score = 93.3 bits (102), Expect = 9e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||||||| |||||||| ||||||||||| || || | ||||| ||||| || | || Sbjct 1580394 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCA 1580335 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || ||||| ||||| || || | |||||| || || ||||||||| Sbjct 1580334 ACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 1580284 >seq1739 Length=643 Score = 123 bits (136), Expect = 5e-23 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| ||||||| || |||||||| |||||||| || |||||||||| ||| ||||| ||| Sbjct 301 AAACTGGACCCGTACATCAACGTGGATCCGGGCACCATGAGCCCGATTCAGCATGGGGAA 360 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACG 301541 || ||||| || || || || || ||||||||||||||| |||| |||||||| || Sbjct 361 GTTTTCGTCACCGAAGACGGCGCAGAAACCGATCTGGATTTGGGTCACTACGAGCG 416 >seq11655 Length=270 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 301432 GACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTC 301491 || |||||| ||||| ||||||| || |||||| ||| ||| || || ||||||||| Sbjct 171 GATCCCTATCTCAACCTCGATCCCGGAACGATGTCGCCGTATCAGCACGGTGAAGTGTTC 112 Query 301492 GTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCAC 301547 ||||| || || || || || |||||||| ||||| || || ||||| |||||||| Sbjct 111 GTGACCGACGACGGCGCCGAGACCGATCTCGATCTCGGCCATTACGAGCGTTTCAC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046539893987094