Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq14858 127 1e-24 seq14857 116 3e-21 >seq14858 Length=1827956 Score = 127 bits (140), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | ||| |||| ||| || || |||||| || |||||||| || Sbjct 1580287 CATTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTC 1580228 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | || |||| |||| |||||| || ||||| |||| |||||||||||| Sbjct 1580227 AGACAGAGTTCG-GC-CGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCA 1580170 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||||||| ||| ||||| ||||| | | |||||||| | | Sbjct 1580169 GGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGC 1580110 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||| || |||||||| || || |||||||| ||||| ||||| Sbjct 1580109 TCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580057 Score = 127 bits (140), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || | ||| |||| ||| || || |||||| || |||||||| || Sbjct 1580916 CATTCCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTC 1580857 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | || |||| |||| |||||| || ||||| |||| |||||||||||| Sbjct 1580856 AGACAGAGTTCG-GC-CGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCA 1580799 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||||||| ||| ||||| ||||| | | |||||||| | | Sbjct 1580798 GGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGC 1580739 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||| || |||||||| || || |||||||| ||||| ||||| Sbjct 1580738 TCAACATCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 122 bits (134), Expect = 6e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCG 44182 ||| |||| ||| || || |||||| || |||||||| || | ||||| | || || Sbjct 1581126 CAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCG-GC-CG 1581069 Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| |||||| || ||||| |||| |||||||||||| | || | ||||||||| Sbjct 1581068 TCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 1581009 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||||| | | |||||||| | | || || || | ||| || Sbjct 1581008 TCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATG 1580949 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || |||||||| ||||| ||||| Sbjct 1580948 GTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 Score = 122 bits (134), Expect = 6e-23 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCG 44182 ||| |||| ||| || || |||||| || |||||||| || | ||||| | || || Sbjct 1581650 CAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCG-GC-CG 1581593 Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| |||||| || ||||| |||| |||||||||||| | || | ||||||||| Sbjct 1581592 TCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTG 1581533 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| ||||| ||||| | | |||||||| | | || || || | ||| || Sbjct 1581532 TCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATA 1581473 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || || |||||||| ||||| ||||| Sbjct 1581472 GTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 >seq14857 Length=2032611 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCG 44185 ||||| ||| || ||| ||||| ||||||||||| |||| || || || |||| Sbjct 1173539 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAG--GGTTCTGCCGTCC 1173482 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || |||||||| || || ||||||| ||||||||| || | || | || ||||| ||| Sbjct 1173481 TCGAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCC 1173422 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | || | |||||||| | | || || |||| || |||||| Sbjct 1173421 TGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTC 1173362 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||||||||| || ||||| Sbjct 1173361 TTGCCGGTGAGCGTCTTCACGAAAATCTGCAT 1173330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359925199101237