Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000258005.2_202014-06-30] 14,861 sequences; 67,701,403 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14857 122 8e-23 seq14858 120 3e-22 >seq14857 Length=2032611 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || ||| |||||||| ||||| |||||||| ||||| | |||| || Sbjct 1173539 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 1173480 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||| ||||| ||||| ||||| ||||| | |||| | |||||| ||| | Sbjct 1173479 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCC-T 1173421 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || || | || | | ||||| | ||| || |||| || ||||| | Sbjct 1173420 GAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCT 1173361 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || |||||||| |||||||||||||| || Sbjct 1173360 TGCCGGTGAGCGTCTTCACGAAAATCTGCATTTT 1173327 >seq14858 Length=1827956 Score = 120 bits (132), Expect = 3e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || |||| || || || ||||||||||||||| ||||| || Sbjct 1580283 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580224 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||| || || ||||| ||||| || || | |||| Sbjct 1580223 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580164 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||||| | | ||||| || ||| || Sbjct 1580163 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580104 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGATGGA 41874 || | ||| || || || || || || ||||| || || |||||||| || |||| || Sbjct 1580103 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATTTTGGCGATAGA 1580045 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || |||| || || || ||||||||||||||| ||||| || Sbjct 1580912 CCTCCGCGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1580853 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||| || || ||||| ||||| || || | |||| Sbjct 1580852 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1580793 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||||| | | ||||| || ||| || Sbjct 1580792 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1580733 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || || || ||||| || || |||||||| Sbjct 1580732 TCAAGCGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580686 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || ||||||||||||||| ||||| || Sbjct 1581664 CCACCACGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAC 1581605 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||| || || ||||| ||||| || || | |||| Sbjct 1581604 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 1581545 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| ||| ||||| | | ||||| || ||| || Sbjct 1581544 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACA 1581485 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || || || ||||| || || |||||||| Sbjct 1581484 TCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1581438 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || |||| || || || ||||||||||||||| ||||| || || || || Sbjct 1581131 AGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGG 1581072 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || | ||||||||| || || ||||| ||||| || || | ||||| | ||| Sbjct 1581071 CCGTCTTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 1581012 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| ||| ||||| | | ||||| || ||| || || | ||| Sbjct 1581011 TTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTG 1580952 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || || |||||||| Sbjct 1580951 ATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 1580914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462218121253200