Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5653 84.2 5e-11 seq1029 84.2 5e-11 seq928 84.2 5e-11 >seq5653 Length=4782 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 2659 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCAGGGGTTCGAGCCCC 2604 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 3099 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCAGGGGTTCGAGCCCC 3044 >seq1029 Length=5520 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||| || |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 4247 CTTGCCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCG 4306 Query 165767 AGCCCC 165772 |||||| Sbjct 4307 AGCCCC 4312 >seq928 Length=8940 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 8113 TAGCTCAGTCGGTAGAGCGCCAGCCTTTTAAGCTGGTGGTCAGGGGTTCGAGCCCC 8058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057331199466800