Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq17399 102 1e-16 >seq17399 Length=5604 Score = 102 bits (112), Expect = 1e-16 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 145689 CTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTC 145748 ||| |||||||| |||||| |||| || ||||| || ||| ||||| |||| || | Sbjct 738 CTCGACGTGGTTCGAGTAGACATGCGTGTTCCCCATGAAGTGAATGAACTCCCTAGGTTT 797 Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 ||| || ||| || |||||| |||| || || ||| || ||||||||||| Sbjct 798 TAGGTTGCAGACGTGTGCAACCATGAGCGTCAAAAGCGAATAGGAAGCAATGTTGAAGGG 857 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTC---CCCGCC 145865 || || || || | || | ||| ||||| |||| |||||| | ||| | | | Sbjct 858 GACGCCGAGGCCGACATCGCACGACCGCTGATACATGATGCAGGACAACTCTTTCTGGTC 917 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||| |||| | |||||| |||||||| ||||| Sbjct 918 GTTCACGTAGAACTGACACAACAAGTGGCAAGGCGGCAGAGCCAT 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589808610094400