Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq35672 109 5e-19 seq1218 89.7 4e-13 >seq35672 Length=222 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| || | ||| |||||||| |||||||| ||||| | ||| ||| || |||||||| Sbjct 13 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCC 72 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | ||| ||||| ||| |||| || | |||||| || ||| | ||||||||||| | Sbjct 73 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 132 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 |||||| ||||| | ||| || || ||||| || | || || ||||| Sbjct 133 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTT 192 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| | || || ||||| || |||||| Sbjct 193 CCGGTAAGAGTCTTCACAAAGATCTGCATT 222 >seq1218 Length=18807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | |||||| ||||| || ||||| ||||| | |||||| | ||||||| Sbjct 15546 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 15487 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||||| ||||| || | || || | ||||||||| || | || ||||| || Sbjct 15486 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 15427 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 ||||| || || | ||| || ||| ||||| |||| || || ||||| Sbjct 15426 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTT 15367 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||| | ||| || || || || ||||||||| Sbjct 15366 GCCGGTGAGCGTCTTCACGAAAATCTGCATTTTG 15333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422072081113760