Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1218 132 5e-26 >seq1218 Length=18807 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || |||||||| ||||| || ||||| | |||||||| | Sbjct 15334 AAAATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCT 15393 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||||| || |||| || || ||||| || || | ||| Sbjct 15394 TCTGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGAC 15453 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| | ||||| ||||||| Sbjct 15454 CAGCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTAC 15513 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| |||| || || Sbjct 15514 AACATCCAGAAGGAATCCACTCTCCA 15539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514985032873600