Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq35672 120 2e-22 seq1218 113 3e-20 >seq35672 Length=222 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240 |||| ||| | ||| || ||||| ||||||||||| ||||| ||| |||| ||| Sbjct 13 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCC 72 Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300 ||||||||||| || ||||| || |||||||| || ||| | | |||||||| Sbjct 73 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 132 Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360 |||||| ||| | || | || | || | || || || || | |||||| || || Sbjct 133 ATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTT 192 Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| ||||||||||||||||| Sbjct 193 CCGGTAAGAGTCTTCACAAAGATCTGCAT 221 >seq1218 Length=18807 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34180 CACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTC 34239 ||||| ||| | ||| ||| ||||| |||||||||||||| || | | |||| || Sbjct 15546 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 15487 Query 34240 CAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGC 34299 | ||||||||||||||| || || ||||||||||| || | | |||||| || Sbjct 15486 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 15427 Query 34300 TATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTT 34359 ||||| ||| | || | || | || | | |||||||||| ||||| || || Sbjct 15426 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTT 15367 Query 34360 GCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||| || ||||| || |||||||| Sbjct 15366 GCCGGTGAGCGTCTTCACGAAAATCTGCAT 15337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322928834681600