Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12278 181 9e-41 seq1218 113 4e-20 seq35672 111 1e-19 seq2813 89.7 5e-13 >seq12278 Length=2500 Score = 181 bits (200), Expect = 9e-41 Identities = 325/475 (68%), Gaps = 7/475 (1%) Strand=Plus/Plus Query 22727 GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTG 22786 ||||| || ||||| || ||||| | ||| || | || ||| ||||||||| || || Sbjct 1746 GCGGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTG 1805 Query 22787 TTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGC 22845 ||||| || || || ||| ||| |||| ||| || | | || ||| ||||| || Sbjct 1806 TTCAAGACGCGAGCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGC 1864 Query 22846 CATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGG 22905 | |||||| || || | ||||| ||||||| | || || | || || ||||| Sbjct 1865 GAGACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGG 1924 Query 22906 CAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTAT 22965 || ||| || | || |||||| | |||||||||||| |||| | ||| || Sbjct 1925 CACAGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGAT 1984 Query 22966 NNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT----GTACAACAAACTTGTTGACGG 23021 || |||||| ||| || | | | | || |||||| | | Sbjct 1985 TCGCTTCAAGTGTTCGAAGTCG-AAAGTCCGGCTCTCGCGGTCCACGAACTTGGGCAGCG 2043 Query 23022 CGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGG 23081 || ||||| | ||||| || ||||||||||||||| ||||||||| || | ||| | Sbjct 2044 AGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGACGACTTCTG 2103 Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 | || | ||||| || || || || ||||| || |||||||||| || |||||||| | Sbjct 2104 TGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAG 2163 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||||||||||||||||||||||||| |||| || || ||||| Sbjct 2164 CGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCGC 2218 >seq1218 Length=18807 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| |||||||| | ||||| || || Sbjct 15334 AAAATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCT 15393 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||||| ||||| | || ||| ||||| || | ||||| ||| Sbjct 15394 TCTGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGAC 15453 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| | || | ||| || Sbjct 15454 CAGCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTAC 15513 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| ||||| || |||| Sbjct 15514 AACATCCAGAAGGAATCCACTCTCCACTTGGT 15545 >seq35672 Length=222 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || ||||| ||||| Sbjct 221 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 162 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | |||||||||||| | || || || || Sbjct 161 GACACCATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGATCA 103 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||| ||| ||| || || || || Sbjct 102 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 43 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || |||||||| || |||| Sbjct 42 CATTCAGAAGGAGTCGACTCTCCACTTGGT 13 >seq2813 Length=6432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 57992 CGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCG 58050 ||| ||||| || |||| || ||||| |||| | || || ||| ||||||| || | Sbjct 3836 CGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCG-CTATTTTCTGGCTGAAGAAGCGAG 3778 Query 58051 GCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATA 58110 || ||||||| ||||| || || ||||||||||| || ||||||||||| || || Sbjct 3777 GCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGACTGCACG 3718 Query 58111 CTGATTTTGCGTGCCTAATGTACTCTCA 58138 | || |||||||| || | ||||| || Sbjct 3717 CAGACTTTGCGTGTCTCCTCTACTCGCA 3690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445563799171200