Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq16 158 2e-34 >seq16 Length=15463 Score = 158 bits (174), Expect = 2e-34 Identities = 198/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || || ||||||||||| || ||||||||||| || | Sbjct 10968 CGCGAAGCGTCACCGAA-AGGTGTTGCGTGATAACATCCAGGGTATCACCAAGCCGGCCA 11026 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| ||||||||||| || |||||| | ||||| | |||||||||||| Sbjct 11027 TCCGCCGTCTGGCGCGTCGTGGTGGTGTGAAGCGTATTTCTGGTCTCATCTATGAAGAGA 11086 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | |||| ||| |||||| | ||||| ||| | | ||| | || | || ||| || | Sbjct 11087 TCCGTGGTGTCTTGAAGGTGTTCCTTGAGAACATCATCAAGGACTCCGTCACCTACACGG 11146 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| | ||||| |||||| | ||||| || ||||| | |||| || || | Sbjct 11147 AGCACGCCCGCAGAAAGACCGTCACCGCTATGGACATTGTCTACTCCCTGAAGCGCCAGG 11206 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||| || ||||| Sbjct 11207 GCAGAACCCTCTACGGTTTCGGTGGTTAA 11235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79041955797480