Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq12278 113 4e-20 seq1218 100 3e-16 seq35672 87.8 2e-12 >seq12278 Length=2500 Score = 113 bits (124), Expect = 4e-20 Identities = 313/473 (66%), Gaps = 24/473 (5%) Strand=Plus/Plus Query 145330 GGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTT 145389 ||||||||||||||| ||||| |||||| |||| || || |||| || | ||||| Sbjct 1748 GGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTT 1807 Query 145390 GAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAG 145449 | | ||||| ||| ||| |||| ||| || || | || || || ||||| Sbjct 1808 CAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAG 1867 Query 145450 CCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-- 145507 ||||| | ||||| |||| || || ||| || ||||||| || |||| ||| Sbjct 1868 ACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCT---TCGGG 1924 Query 145508 -ATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAAT 145566 | ||| || || || ||||| | |||||||||| | | || || || Sbjct 1925 CACAGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGAT 1984 Query 145567 GTGCCGCAACTTTTCAAAGTCAAA---CCGAGCCTCG---TCAACGACCACA--CAGCTA 145618 || ||| | ||| ||||| || ||| |||| || |||| | |||| | Sbjct 1985 TCGCTTCAAGTGTTCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAACTTGGGCAGCGA 2044 Query 145619 TTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCG-TCGCTGTATTGTAC 145677 ||||| | ||||| || || || ||| ||| || | ||| |||| | || Sbjct 2045 --GACGGAG------GCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TGTACTCGAC 2095 Query 145678 GATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCT 145737 || || | |||||| ||||| |||||||| ||||||| || | ||| || || |||| Sbjct 2096 GACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCG 2155 Query 145738 GTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCT 145790 ||||| ||||| ||||| ||||||||||| ||| ||||| | |||| || Sbjct 2156 ATTGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCT 2208 >seq1218 Length=18807 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131025 CACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTC 131084 ||| || || | || || ||||| || |||||||| ||| | ||| | |||||| Sbjct 15546 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 15487 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 ||||||||||||||| |||| | |||||||||||| || || ||||| || || || Sbjct 15486 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 15427 Query 131145 GATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 || || ||||| | || | || || | | ||||| ||| | || | || || Sbjct 15426 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTT 15367 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || || |||||||||||||| Sbjct 15366 GCCGGTGAGCGTCTTCACGAAAATCTGCAT 15337 >seq35672 Length=222 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||||| || || || | ||||||||||| ||||||||||| || || || || Sbjct 6 ACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCC 65 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| | ||||||||| || | || | ||||||||| || || || || ||||| || Sbjct 66 GTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTT 125 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | ||| | || || | | ||| | || | || | Sbjct 126 GTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGAT 185 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| ||||| || || || |||||||| Sbjct 186 AGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471798270182400