Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq35672 93.3 3e-14 seq1218 91.5 1e-13 >seq35672 Length=222 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| || || || |||||||| || ||||||||||| | || ||| | |||||||| Sbjct 13 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCC 72 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 || || ||||| ||| |||| || ||||| || || || | || || ||||| || Sbjct 73 AACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGG 132 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 ||||| |||||| | | | ||||| ||||| || | ||||| || | Sbjct 133 ATCTTTGC--CTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCT 190 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||||| || || || ||||| ||||||||| Sbjct 191 TTCCGGTAAGAGTCTTCACAAAGATCTGCATT 222 >seq1218 Length=18807 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| || || ||||| ||||| || ||||||||||||| | |||| || ||||||| Sbjct 15545 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 15486 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 | || ||||| || | || || ||||| ||||| || | ||||| || || | Sbjct 15485 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 15426 Query 16847 ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTT 16906 || | ||| || | | | ||||| ||||| |||| ||||| || || Sbjct 15425 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTG 15366 Query 16907 CCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| ||||| || || ||||||||||||||| Sbjct 15365 CCGGTGAGCGTCTTCACGAAAATCTGCATTTTG 15333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404908490316400