Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12278 122 7e-23 seq35672 118 9e-22 >seq12278 Length=2500 Score = 122 bits (134), Expect = 7e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 129700 GAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCAC 129759 |||||||| |||||||| || |||| |||| |||||||||| | ||| | |||| Sbjct 2049 GAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGACGACTTCTGTGCAC 2108 Query 129760 AAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCT 129819 || || || ||| || || ||||| | ||| || || || ||| |||||||| ||| Sbjct 2109 AAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAGCGTCT 2168 Query 129820 TTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 ||||||| |||||||||||||||||| |||| ||||| Sbjct 2169 TTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCG 2205 >seq35672 Length=222 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||| ||||| || || | | Sbjct 221 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 162 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| || || |||||||| |||||||| || ||||| Sbjct 161 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 102 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| ||||| ||| || | || || |||||| Sbjct 101 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 42 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || || | || || || ||||| Sbjct 41 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419542002783400