Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4544 96.9 7e-15 seq2813 84.2 4e-11 >seq4544 Length=5283 Score = 96.9 bits (106), Expect = 7e-15 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 142058 TGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCGC 142117 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2183 TGTGGCGCAATGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAGTCCCGC 2124 Query 142118 C 142118 | Sbjct 2123 C 2123 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 142059 GTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCGCC 142118 ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| || Sbjct 3584 GTGGCGCAATGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGTGGGTTCGAGTCCCACC 3525 >seq2813 Length=6432 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 ||||||| | ||| | ||||| ||||| | ||| ||| | | |||||| |||||||| Sbjct 3675 AGCTTGTGTTTCAGTTGCGAGTAGAGGAGACACGC-AAAGTCTGCGTGCAGTCCCTCGTC 3733 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 |||| || |||||||| || | | ||||| ||||||| || || ||| | ||||| Sbjct 3734 GCGAGAAATCAACTCGTTCGAGAAAGTGAGGCCCGGCATCAAGCCTCGCTTCTTCAGCCA 3793 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAG 251948 ||| || ||||| ||| |||| ||| || Sbjct 3794 GAAAATAGCGCAGAAGCTTCCACTGAAGAG 3823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027357969378760