Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13]
36,360 sequences; 51,498,142 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1218 161 2e-34
seq35672 152 9e-32
seq1993 100 5e-16
seq1029 86.0 1e-11
seq8989 84.2 4e-11
seq734 84.2 4e-11
>seq1218
Length=18807
Score = 161 bits (178), Expect = 2e-34
Identities = 164/214 (77%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||||||| || ||||| || || |||||||| || ||||| || || || || || ||
Sbjct 15545 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 15486
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || ||||| || || | || ||||| || ||||| || ||||| || |||
Sbjct 15485 AGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 15426
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| |||||||| ||||||||||| | | || || ||||| ||||| || ||
Sbjct 15425 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTG 15366
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466
|| ||||| ||||| ||||| ||||||||| |||
Sbjct 15365 CCGGTGAGCGTCTTCACGAAAATCTGCATTTTGC 15332
>seq35672
Length=222
Score = 152 bits (168), Expect = 9e-32
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300
||||| ||||| |||||||| || || ||||| || || ||||| || || || || ||
Sbjct 1 CGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTT 60
Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360
| || || || |||||||| || || || || || | || || || || ||||| |||
Sbjct 61 CGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCT 120
Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420
|||||||| || ||||||||||| || |||||||||||||| | || || || |
Sbjct 121 TCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGC 180
Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| || ||||| || || ||||| || || |||||||||
Sbjct 181 GTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 222
>seq1993
Length=9424
Score = 100 bits (110), Expect = 5e-16
Identities = 94/117 (80%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 268367 GTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATG 268426
|||||||||| ||| |||||||| | ||| | | | ||||| |||||||||||||| ||
Sbjct 456 GTGATTTTTCTGGTGACGAACGTTTTGCCTCTTCGCGGGCTTTCGTGGTTGAAGAGAATT 515
Query 268427 CCGTTGCACGC-GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482
|| ||| |||| |||||| || || ||| | ||||||||| ||||||||||| ||
Sbjct 516 CCATTG-ACGCAGAACATCCCGTAGCTCTCTCTGTAGTTCACAACCGTCCAGTACGC 571
>seq1029
Length=5520
Score = 86.0 bits (94), Expect = 1e-11
Identities = 57/62 (92%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 84458 CCGGT-TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516
||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||
Sbjct 4251 CCGGTGTAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCC 4310
Query 84517 CC 84518
||
Sbjct 4311 CC 4312
Score = 84.2 bits (92), Expect = 4e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518
|||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 3703 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 3648
>seq8989
Length=2537
Score = 84.2 bits (92), Expect = 4e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518
|||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 592 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 647
>seq734
Length=10462
Score = 84.2 bits (92), Expect = 4e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518
|||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 5110 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 5055
Score = 84.2 bits (92), Expect = 4e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518
|||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 5261 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 5206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921203522619200
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |