Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12278 140 6e-28 >seq12278 Length=2500 Score = 140 bits (154), Expect = 6e-28 Identities = 313/464 (67%), Gaps = 12/464 (3%) Strand=Plus/Plus Query 244372 GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTT 244431 ||| |||| || || | ||||| |||||| ||||||| ||||||||| | |||| Sbjct 1748 GGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTT 1807 Query 244432 CATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAG 244491 || | |||| || | | || | ||| || || | | ||||||| |||| || || Sbjct 1808 CAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAG 1867 Query 244492 TCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCAC 244551 ||||| || || | |||| |||| ||||||| |||| | | ||||||||||| Sbjct 1868 ACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGGCAC 1927 Query 244552 GGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTC 244611 ||||| |||| | |||||||| ||| | ||| | || || | ||||| || Sbjct 1928 AGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGA-TTC 1986 Query 244612 GGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTC 244671 | | || || ||| | ||| | | || |||| | | | || ||| |||| Sbjct 1987 G--CTTCAAGTG---TTCGAAGTCGAAAG--TC--CGGCTCTCGCGGTC--CACGAACTT 2035 Query 244672 GTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGAC 244731 | || | |||| ||||| ||||||||| |||||||| || | | ||||||| ||| Sbjct 2036 GGGCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGAC 2095 Query 244732 AATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGC 244791 | || ||||| | ||| ||||| ||||| || |||| || || || ||| ||| Sbjct 2096 GACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCG 2155 Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGA 244835 ||||| ||||| ||||| |||||| | ||| || ||||||| Sbjct 2156 ATTGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGA 2199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943909997833600