Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1218 114 3e-20 seq35672 113 1e-19 >seq1218 Length=18807 Score = 114 bits (126), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || || | ||||| || | || || |||||||| Sbjct 15528 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCTGCGAA 15469 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||||||||| || | || ||||| || |||||||| || || || || || || Sbjct 15468 GATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTGACATT 15409 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | || || || | ||||||||||| ||||| || ||||| || Sbjct 15408 TTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTCTTCAC 15349 Query 288462 GAATATCTGCATTATG 288477 ||| ||||||||| || Sbjct 15348 GAAAATCTGCATTTTG 15333 >seq35672 Length=222 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || || || ||||| || || || || || || || Sbjct 31 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 90 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || ||||| || Sbjct 91 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 150 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || |||||||| ||||| ||||| |||||||| || Sbjct 151 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACA 210 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 211 AAGATCTGCATT 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179104843252080