Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq36021 120 3e-22 >seq36021 Length=4195 Score = 120 bits (132), Expect = 3e-22 Identities = 176/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || |||||| ||| || || || |||| |||||| | ||||||||| Sbjct 3730 TACATCCGAGGAACGAATGGCTACTCGAATGGTCTTCTCCCGATGCTCAGAGTCTTCAAC 3789 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | || ||||||||||| |||||||| || || | | || || |||| | || Sbjct 3790 GATGCCGCGCGCTACGTCGACCAGGGCGGCGGCAAACGCAAAGGCAGCCTCGCCATTTAC 3849 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||| || || | |||| ||||| | ||||||||||||||| Sbjct 3850 TTGGAGCCATGGCACTTTGATGTCTTCGATTTCCTCGACATCAAAAAGAACCACGGCAAG 3909 Query 94252 GATCTGGAG---AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || |||| | || | |||||||||| || |||||| | ||||| || || ||| Sbjct 3910 GA---GGAGCGACGTGCTCGCGACCTCTTCTGTGCCCTCTGGATCCCAGATCTCTTCATG 3966 Query 94309 AAACGCGT 94316 ||||||| Sbjct 3967 GAACGCGT 3974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494498348305600