Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12278 129 6e-25 seq35672 102 8e-17 seq36021 82.4 8e-11 seq2813 82.4 8e-11 >seq12278 Length=2500 Score = 129 bits (142), Expect = 6e-25 Identities = 404/616 (66%), Gaps = 26/616 (4%) Strand=Plus/Plus Query 153302 GGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 ||| || ||||| || |||||||| ||| | |||| || ||| ||| | | | || Sbjct 1748 GGCGAGCTCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTT 1807 Query 153362 GAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAG 153421 | ||| ||||| ||| ||| |||| ||| || |||| |||||||| || || Sbjct 1808 CAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAG 1867 Query 153422 ACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTAT 153481 |||||||| || | |||| ||||| || | |||||| | |||| | | Sbjct 1868 ACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGGCAC 1927 Query 153482 GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTAT-CG 153540 || |||| || |||||||| | ||| | ||| | | || ||||| || || Sbjct 1928 AGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATTCG 1987 Query 153541 CCTTAAGTTTCTCGAAATCATAGGTCA---TTTCG---TCGACG--CGTACGCATCGATT 153592 | | |||| | ||||| || | ||| | ||| || ||| | | ||| ||| Sbjct 1988 CTTCAAGTGT-TCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAACTTGGGCAGCGAG- 2045 Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGA 153651 |||| | |||| || ||||| ||| ||| || | ||| |||||| |||| Sbjct 2046 -ACGG------AGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TGTACTCGACGA 2097 Query 153652 TCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGAT 153711 || | ||| | |||||||||||| || ||||| || | ||| ||||| || |||| Sbjct 2098 CTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGAT 2157 Query 153712 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT-- 153769 |||| ||||||||| | ||||||||||| ||| ||||||| ||||| | || || Sbjct 2158 TGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCG 2217 Query 153770 -AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATC 153828 ||||| | |||| ||| ||| | | | || |||| || || |||| ||||| | Sbjct 2218 CAAACCAA---AGGTGCTGAGCTGGAATCGTCTTCCGACCCCGACCTTCGCGTTCGTAGC 2274 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCG 153888 ||||||||| | || |||||||| | || | | || || |||| | | Sbjct 2275 GCTCGTACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCCGGGCACTCGTTGG 2334 Query 153889 GACACATCAGCGACCA 153904 |||||||||||| ||| Sbjct 2335 GACACATCAGCGTCCA 2350 >seq35672 Length=222 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 |||||| || || || | | |||||||| |||||||||||||| || ||| || Sbjct 6 ACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCC 65 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 |||||| | || || || | | | || |||||||| || || || || |||||||| || Sbjct 66 GTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTT 125 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 ||| ||| ||| || | | || | |||||| | || ||| || || | ||| | Sbjct 126 GTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGAT 185 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || ||||| || ||||| |||||||| Sbjct 186 AGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 221 >seq36021 Length=4195 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 154298 CATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTT 154357 ||||||||| | | || || || || |||||||| | || ||||| || | || Sbjct 3311 CATTTGCGGGCGGGGGGTGCCGGCGTTGAACAGGGTGGGCGTTGCATGCGTGAAGAACTT 3252 Query 154358 TTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAG 154417 || ||||||| ||| |||||||| || | || | ||| | | ||||||||| Sbjct 3251 CTGACTCATCAGTTCGTAGGTTTCGATCGCTTTCTCCACATCCCCACAATGAATGCCGCA 3192 Query 154418 CGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAG 154477 |||||| | ||||||||||||||| ||||| ||| | | | | || ||||||| ||| Sbjct 3191 CGCGACTCTCATGAGCATGTGCTGGGGACGCTCGACAATCCGGTCGTGGATCTTCAGGAG 3132 Query 154478 ATA 154480 || Sbjct 3131 GTA 3129 >seq2813 Length=6432 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 52475 AGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCA 52534 |||| | ||||| ||||| || ||| ||||||||||| || |||||||| |||||||| Sbjct 3779 AGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGACTGCA 3720 Query 52535 CACGGACTTTGCGTG---CCTCTACT 52557 | | ||||||||||| |||||||| Sbjct 3719 CGCAGACTTTGCGTGTCTCCTCTACT 3694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496036848739200