Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12278 100 3e-16 >seq12278 Length=2500 Score = 100 bits (110), Expect = 3e-16 Identities = 213/311 (68%), Gaps = 18/311 (6%) Strand=Plus/Minus Query 123453 TGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTT 123512 ||| |||| ||||||||| | ||| || || |||| || || | ||| | | || Sbjct 2350 TGGACGCTGATGTGTCCCAACGAGTGCCCGGGTTTGACGGAGGTGTGGGGCGACGAATTC 2291 Query 123513 GACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGG---TTCCGGCA 123569 | |||||||||| || ||||| |||||||| | || | | || |||| || Sbjct 2290 AAAGAGTTGTACGAGCGCTACGAACGCGAAGGT---CGGGGTCGGAAGACGATTCCAGCT 2234 Query 123570 CGTGA--TTTGTTCAAATTT--ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACAT 123625 | | |||| | || ||| || | | ||| |||| || || ||||||||||| Sbjct 2233 CAGCACCTTTGGT----TTGCGATTCTCCAGGCGCAAATCGAGACGGGCACGCCGTACAT 2178 Query 123626 GCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATG 123685 ||| ||||||||||| ||||| |||| | ||| |||| ||||||||||| || ||||| Sbjct 2177 GCTGTACAAAGACGCTTGCAATCGGAAGAGCAACCAGAAGAACTTGGGAACTATCAAATG 2118 Query 123686 TAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC--CGATCAAGTGGCCGTGTGT 123743 || || | ||| | ||| | |||| |||| ||| || || | ||||| || || Sbjct 2117 CAGCAACTTGTGCACAGAAGTCGTCGAGTACA-CGA-GCAAAGACGAGGTGGCTGTCTGC 2060 Query 123744 AATTTGGCTTC 123754 || ||||| || Sbjct 2059 AACTTGGCCTC 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451797764545600