Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2813 98.7 2e-15 seq12278 87.8 3e-12 >seq2813 Length=6432 Score = 98.7 bits (108), Expect = 2e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 ||||| ||||||||||| ||||||||||||||| ||||| || |||||||| || | Sbjct 3699 AGGAGACACGCAAAGTCTGCGTGCAGTCCCTCGTCGCGAGAAATCAACTCGTTCGAGAAA 3758 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCT 160035 ||||||||||||| | || ||| || ||||| ||||| | |||| |||| || || Sbjct 3759 GTGAGGCCCGGCATCAAGCCTCGCTTCTTCAGCCAGAAAATAG-CGCAGAAGCTTCCACT 3817 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || | || || |||||| ||||| |||| Sbjct 3818 GAAGAGAATGCCTTCCACGCATGCAAAGCCCAC 3850 >seq12278 Length=2500 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/151 (75%), Gaps = 9/151 (6%) Strand=Plus/Plus Query 204271 AATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTA 204330 |||||||| |||||||||||||||||| |||| || ||| || ||||| | |||||||| Sbjct 1045 AATCTGAGAGGTGCTGGCCGTGGGCATAGGAGACACGAGGAGAGAGTTCCTCACACCGTG 1104 Query 204331 TTTTTGGACCCTGCGCT-TCAGAGAGGTCCAGTCGTGC--ATCGC---ACTGGGTTTCAC 204384 || | || || | || ||||| |||||| | | ||| || ||| |||| Sbjct 1105 CTTCTTGA-TCTTCTCTCTCAGACCATCCCAGTCACACAAACCGCTCGACGGGG--TCAC 1161 Query 204385 GCCCCACATGTCGAACTGAAAGATGCCTTGA 204415 |||||||||||||||||| | ||||| ||| Sbjct 1162 GCCCCACATGTCGAACTGGAGAATGCCCTGA 1192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794793801961600