Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq36199 105 5e-17 >seq36199 Length=11811 Score = 105 bits (116), Expect = 5e-17 Identities = 248/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| || || || | |||||| |||||||| ||||| ||||| || | | || || Sbjct 10091 ATACCGTTAGCGTCGATATCAAAAGTGACTTCGATTTGGGGGACACCACGGGGGGCGGGG 10150 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || ||||| | ||| | ||||| || || ||||| || | || ||| Sbjct 10151 GGGATACCATCCAAGTGGAATTTGCCCAGGAGGTTGTTGTCTTTGGTCATCGCACGCTCA 10210 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || ||| | | || || ||| | | || || || | || ||||| || |||| Sbjct 10211 CCTTCGTACACCTGAATCAGCACTCCTGGCTGGTTGTCCGCGTACGTTGTGAAGG-TCTG 10269 Query 517454 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 || || ||| || || ||||||||||| ||||| | |||||||| | |||||| || Sbjct 10270 AGACTTCTTAGTCGGGATCGTTGTGTTTCTCTCAATCAGCTTGGTCATGACACCACCAGC 10329 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 ||| || | ||| ||||| || || | ||||| | || | | || || | || Sbjct 10330 TGTCTCCAGACCGAGAGAGAGGGGCGCAACATCCAGAAGAAGCAAATCCTGCA-CTTGGG 10388 Query 517573 ATCAGTT--TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | | | || |||| || ||||| || | ||||||||| || ||||| || ||| Sbjct 10389 AGCTGGTAACTCCCTTCAAG-ATCGCTGCCTGGACAGCAGCACCGTACGCAACGGCCTCA 10447 Query 517631 TCAGGATT 517638 ||||| || Sbjct 10448 TCAGGGTT 10455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779018097030160