Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq36199 452 5e-122 seq4970 96.9 4e-15 >seq36199 Length=11811 Score = 452 bits (500), Expect = 5e-122 Identities = 1096/1649 (66%), Gaps = 32/1649 (2%) Strand=Plus/Plus Query 6510 TCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTT 6569 |||| || || |||||||| || || |||||||||||||| || | | || || || Sbjct 9897 TCATGTGGTAGCAGTAGTTCTCCAGGCCATTCTTCGCCTCCACGCGGTGCTTGTTCTGTT 9956 Query 6570 CATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT- 6628 | ||||| | || ||||| || || ||||| ||||| || || ||| || Sbjct 9957 CGTCTTCGGCCTTGTACTTCTCTGCCTCTTGCACCATGCGGTCGAT---TTCGGACGCAC 10013 Query 6629 --AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 | | ||||| || || || || || || | | | || || | || ||| |||| Sbjct 10014 TGAGGCGGCCCTTGTCGTTGGTGATGGTGATTTGGTTGCTCTTTCCGGTGGACTTGTCTT 10073 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 || | || |||| ||||| || || || | ||| || | || | ||||| || Sbjct 10074 GCGCCGTGACGTTCATGATACCGTTAGCGTCGATATCAAAAGTGACTTCGATTTGGGGGA 10133 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 ||| | || |||| || ||||| || | ||| | || || | |||| || Sbjct 10134 CACCACGGGGGGCGGGGGGGATACCATCCAAGTGGAATTTGCCCAGGAGGTTGTTGTCTT 10193 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTG 6866 | | | || ||| |||||||| || || | ||| ||| | || || || || Sbjct 10194 TGGTCATCGCACGCTCACCTTCGTACACCTGAATCAGCACTCCTGGCTGGTTGTCCGCGT 10253 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 ||||| |||| | || ||||||| || ||||| || |||||| ||| | | || Sbjct 10254 ACGTTGTGAAGGTCTGAGACTTCTTAGTCGGGATCGTTGTGTTTCTCTCAATCAGCTTGG 10313 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | |||||| || || || || ||||| || || | || |||| || | || Sbjct 10314 TCATGACACCACCAGCTGTCTCCAGACCGAGAGAGAGGGGCGCAACATCCAGAAGAAGCA 10373 Query 6987 GGTCTTGAACA---GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 || || || || | | || ||| | ||||| || || ||||| | || | Sbjct 10374 AATCCTGCACTTGGGAGCTGGTAACT---CCCTTCAAGATCGCTGCCTGGACAGCAGCAC 10430 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || |||||||| ||||| |||| | | | || || ||||| || | | Sbjct 10431 CGTACGCAACGGCCTCATCAGGGTTGATCGACCTGCACGGCTCCTTTCCGTTGAAGAAGT 10490 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 | | | | || || || || ||||| || || |||||||| ||||| || | ||| Sbjct 10491 CAGTGATGAGCTGCTGGATCTTGGGGATACGGGTAGATCCACCAACCAACACAACTTCGC 10550 Query 7164 TCACTTTCGAT---TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC 7220 | || ||| || || || ||||| || || ||||| || || Sbjct 10551 TGAC---CGAACGCTTGTCAATACCAGAGTCCTTGAGGACCTTCTCGACGGGCAACAAGG 10607 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 | || ||||| ||||||| || || ||||||||||| ||||||| || || | || Sbjct 10608 AGTTGCGGAAGTAGTCCATGCAAAGCTCCTCAAAACGCGCACGGGAGATAGACACAGAGT 10667 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACG 7340 | |||| ||| ||| | | || |||||||| ||||||| || | | ||| | | Sbjct 10668 AGTCAATGCCCTCGAAAAGAGAGTCAATTTCGATGGTTGCCTGAGTGCTGCTAGAGAGAG 10727 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 ||| ||| | |||||| ||| || || | |||||||||||||| ||| | | Sbjct 10728 TTCTCTTGGTGCGCTCGCACTGGGTACGCAGCCGACGAAGGGCACGGCTGTTGGTGCTGA 10787 Query 7401 TATC-TTTCTTATGTT--TACGTTTAAACTCTT---CAGAGAAGTGT-CGAAGGAGTCTC 7453 | || |||| ||| | || || || || | | |||||| | || || Sbjct 10788 TGTCCTTTCCGCGGTTCTTGCGCTTGAAGTCCTGGACGCAGAAGTCCACCAAACGGTTG- 10846 Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 ||||||||||||||||| | || ||||| || ||||| || ||||||||||||||| Sbjct 10847 ---TCGAAATCTTCACCACCAAGATGGGTATCACCAGCGGTGGCCTTGACTTCAAAGATA 10903 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || |||| || | | || ||| ||||| || ||||| ||||||| ||| || ||||| Sbjct 10904 CCGTCTTCGATTGTAAGCAGCGACACATCGAAAGTACCGCCACCCATGTCGAAGATGAGG 10963 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 |||||| | || || ||||| || ||||| || ||||| || ||||| || || Sbjct 10964 ACGTTCATCTCACCGCAGCCCTTCTTGTCCAGACCATAGGCGATGGCTGCCGCTGTAGGC 11023 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || |||||||| || | | ||||| ||||| || | ||||| || || || || Sbjct 11024 TCGTTGATAATACGGAGGACGCTGAGGCCGGCAATGGTACCAGCATCCTTGGTAGCCTGA 11083 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || ||||||||||| ||||| || ||||| || | ||| || ||| | |||| ||| ||| Sbjct 11084 CGCTGCGAATCGTTGAAGTACGCGGGGACGGTAATGACGGCCTCCTTCACTTCCTTGCCG 11143 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || || | |||||||| || ||||||||| | ||||| | |||| |||||| | Sbjct 11144 AGGTAAGCCTCCGCGATTTCCTTCATTTTGCCCAACACCATGGCGGAAACCTCTTCGGGG 11203 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 ||| ||| | || || | | |||||||| | ||| || || | | ||| Sbjct 11204 TGGAACGTCTTCTTCTCTCCCTGGTACGTGACTTCAATGAGGGGCTTGTCTCCCGGACCA 11263 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | ||| ||||| | | ||||| ||||| || |||||| |||| |||||| Sbjct 11264 GCGATGACCTTGAATGGCCAATGCTTCATGTCCGACTGGACCGAGGGGTCATCAAACTTG 11323 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| || ||||| ||||| |||| ||||||| ||||| || ||||||| Sbjct 11324 CGGCCGATTAGGCGCTTGGCATCGAAAATGGTGTTTTCCGGGTTGCGTGCGACTTGGTTC 11383 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 ||||| || || |||| ||| | || | | || || ||||||||||| || |||||| Sbjct 11384 TTCGCAGCATCACCGACAAGTC--TC-TCCGTGTCGGTGAACGCGACGTAGGACGGGGTC 11440 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 || | || || ||||||||||| || ||||| || ||||| | ||| || || ||| Sbjct 11441 GTCCTGTTTCCCTGGTCGTTCGCGATGATTTCCACAGCATCGTTCTTCCACACACCTACG 11500 Query 8114 CACGAATACGTTGTTCCTAAATCAATACC 8142 || ||||| || || || | |||||||| Sbjct 11501 CAAGAATAGGTGGTGCCAAGGTCAATACC 11529 >seq4970 Length=20472 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| | ||||| | || || | ||||| |||| | | ||||||| Sbjct 12587 CCAATGAGACGCTTGACGTCAAAGAGCGTATTGGTCGGGTTGATGGTCGCCTCGTTCTTC 12528 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| || || | | | || || || || || || ||||| | Sbjct 12527 GCGGCTTCACCGATCTTGCGGTCGTCGT---CGGTGAAAGCAACATAAGAGGGGGTGATA 12471 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||||| || || || |||||| ||| | | || ||||||||| Sbjct 12470 CGGTTACCCTGGTCGTTCGGGATGATGTCCACGCGGCCGTGGCGGTACACACCGACGCAC 12411 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 || || || ||||| |||||||||||||| Sbjct 12410 GAGTAGGTCGTTCCCAAATCAATACCGAT 12382 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || |||||||| ||||||||||| || || | | ||| | | || | |||| | Sbjct 13295 GAGACATCAAAAGTACCACCACCAAGATCGTACACGAGGATGGTCTTCTCGT------TC 13242 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || ||||||||||| ||||| || || || || || || || ||||| | | | Sbjct 13241 TTCTTGTCCAGACCGTACGCAATAGCAGCAGCGGTCGGCTCGTTGATGATACGGATAACG 13182 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| ||||||||| | | || || || || || ||||| || | ||||| ||||| Sbjct 13181 TTCAAGCCAGCAATCGCACCGGCGTCCTTGGTGGCCTGTCGCTGAGCGTCGTTGAAGTAA 13122 Query 7715 GC 7716 || Sbjct 13121 GC 13120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634844132142400