Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2813 105 8e-18 seq12278 98.7 1e-15 >seq2813 Length=6432 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 102195 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 102254 ||||| || || || || || ||||| ||| |||||||||||||| ||||| ||| Sbjct 3844 TTTGCATGCGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAAG 3785 Query 102255 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 |||||||| | ||||| || ||| ||||| |||||| | || ||||| ||||||||| Sbjct 3784 AAGCGAGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGA 3725 Query 102315 CTCCACCAAGAGTTTGCG 102332 || ||| ||| |||||| Sbjct 3724 CTGCACGCAGACTTTGCG 3707 >seq12278 Length=2500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 112284 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGT 112343 || |||||| || | |||| |||||| || || || || ||||| ||||||||||| || Sbjct 2218 GCGATTCTCCAGGCGCAAATCGAGACGGGCACGCCGTACATGCTGTACAAAGACGCTTGC 2159 Query 112344 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAA 112403 || | ||||| || || ||||| ||||| ||||| | |||| | || |||||| Sbjct 2158 AATCGGAAGAGCAACCAGAAGAACTTGGGAACTATCAAATGCAGCAACTTGTGCACAGAA 2099 Query 112404 ATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 112463 || | || | || |||||| ||| |||||| || ||| | || || || | || Sbjct 2098 GTCGTCGAGTACACGAGCAAAGACGAGGTGGCTGTCTGCAACTTGGCCTCCGTCTCGCTG 2039 Query 112464 CCCAAGTATGTGGATCCAGAGA 112485 ||||||| ||||| | |||| Sbjct 2038 CCCAAGTTCGTGGACCGCGAGA 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620460272579200