Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1218 138 3e-27 >seq1218 Length=18807 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || || || || ||||| |||| ||| ||||| || || |||||||| Sbjct 15540 GTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTG 15481 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||||||||| || || || ||||| || ||||| || || || || ||||| || Sbjct 15480 CTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTT 15421 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| ||| || || || | || | |||||| || || Sbjct 15420 GGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGT 15361 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | || || ||||| | ||||||| Sbjct 15360 GAGCGTCTTCACGAAAATCTGCATTT 15335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108964734128120