Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq36199 120 2e-21 >seq36199 Length=11811 Score = 120 bits (132), Expect = 2e-21 Identities = 360/550 (65%), Gaps = 7/550 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | ||||| || | || ||||| ||| ||| || ||||| ||| | || | | Sbjct 11535 GCTGTGGGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAACGATGCT 11476 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| || || || || || || ||||| || || || || || || | ||||| Sbjct 11475 GTGGAAATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCGTTCACC 11416 Query 550112 GAAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || || | | || || |||||||| || || | |||| | | | || || || Sbjct 11415 GACACGGAGAGACTT-GTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCGGAAAA 11357 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || ||||| ||||| || || |||| || | | ||| |||| | | || ||| | Sbjct 11356 CACCATTTTCGATGCCAAGCGCCTAATCGGCCGCAAGTTTGATGACCCCTCGGTCCAGTC 11297 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGA 550287 || |||||||||||||| ||| | | | || | | ||| || || ||||| Sbjct 11296 GGACATGAAGCATTGGCCATTCAAGGTCATCGCTGGTCCGGGAGACAAGCCCCTCATTGA 11237 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTT 550346 || || | | ||| | || | || || || ||| | |||| | ||||| | Sbjct 11236 AGTCACGTACCAGGGA-GAGAAGAAGACGTTCCACCCCGAAGAGGTTTCCGCCATGGTGT 11178 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | |||||||| ||| || |||| | || | ||||| | ||| || || | Sbjct 11177 TGGGCAAAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGCCGTCA 11118 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || || || || || ||||| ||||| || |||||||| | Sbjct 11117 TTACCGTCCCCGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGGTACCA 11058 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 |||| || || | || || ||||||||||| || ||||| || || || | || |||| Sbjct 11057 TTGCCGGCCTCAGCGTCCTCCGTATTATCAACGAGCCTACAGCGGCAGCCATCGCCTATG 10998 Query 550527 GACTTGATAA 550536 | || || || Sbjct 10997 GTCTGGACAA 10988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027373119216400