Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq35672 132 4e-26 >seq35672 Length=222 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || ||||| ||||| ||||| ||| |||| Sbjct 4 AGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGG 63 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| ||||| ||||| ||||| | ||||| || ||| Sbjct 64 CCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 123 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | ||||||| ||| || || | ||| Sbjct 124 TTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTG 183 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||| || ||||| |||||||| Sbjct 184 ATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380768792264280