Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq36199 367 2e-96 seq35672 185 1e-41 seq1218 129 8e-25 seq4970 105 9e-18 >seq36199 Length=11811 Score = 367 bits (406), Expect = 2e-96 Identities = 1042/1590 (66%), Gaps = 11/1590 (1%) Strand=Plus/Minus Query 195293 TCTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAAT 195352 |||| ||| | ||||| || | || || || || || || || ||||| ||| | || Sbjct 11541 TCTCCTGCTGTGGGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAAC 11482 Query 195353 GATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCC 195412 ||| ||| || || ||| |||| ||||| |||||| | || || || || ||||| || Sbjct 11481 GATGCTGTGGAAATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCG 11422 Query 195413 TTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCT 195472 || || || | || | || || || ||||| || || || || || ||||| Sbjct 11421 TTCACCGACACGGAGAGACTTGTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCG 11362 Query 195473 ATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTC 195532 || || | || || || ||||| || || || ||||||||| || ||| Sbjct 11361 GAAAACACCATTTTCGATGCCAAGCGCCTAATCGGCCGCAAGTTTGATGACCCCTCGGTC 11302 Query 195533 CAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCC-GGTGTGGCTGATAAGCCTAT 195591 || || || ||| | ||| | | | ||| | || | ||| || || ||||| | Sbjct 11301 CAGTCGGACATGAAGCATTGGCCAT-TCAAGGTCATCGCTGGTCCGGGAGACAAGCCCCT 11243 Query 195592 GATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTAT 195651 ||| | || | || || |||||||| || |||||||| |||| | || Sbjct 11242 CATTGAAGTCACGTACCAGGGAGAGAAGAAGACGTTCCACCCCGAAGAGGTTTCCGCCAT 11183 Query 195652 GGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGC 195711 ||||||| || |||||||| | ||||| ||| | | || || ||||| || || Sbjct 11182 GGTGTTGGGCAAAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGC 11123 Query 195712 AGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGC 195771 || | || || || || ||||||| ||||| || || ||||| || ||||| |||| Sbjct 11122 CGTCATTACCGTCCCCGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGG 11063 Query 195772 TGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGC 195831 | | ||||| || || | | || | |||||||| || || |||||||| || || || Sbjct 11062 TACCATTGCCGGCCTCAGCGTCCTCCGTATTATCAACGAGCCTACAGCGGCAGCCATCGC 11003 Query 195832 TTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 ||||||||||||||||| || || | || || | ||||| || | ||||| Sbjct 11002 CTATGGTCTGGACAAGAAGGGCTGCGGTGAGATGAACGTCCTCATCTTCGACATGGGTGG 10943 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 ||||| || ||||| || || || | || |||| ||||| || ||||| ||||| || Sbjct 10942 CGGTACTTTCGATGTGTCGCTGCTTACAATCGAAGACGGTATCTTTGAAGTCAAGGCCAC 10883 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTC 196011 ||||||||||| ||||| ||||||||||||||||| ||| || | | | || Sbjct 10882 CGCTGGTGATACCCATCTTGGTGGTGAAGATTTCGACAACCGT-TTGGTGGACTTCTGCG 10824 Query 196012 T-GATGAGTTCCGTCGAAAGAA--TAAGAAAGATATTTCTGGA--AATCCTAGGGCTCTT 196066 | | || ||| || ||||| ||||| | || | | || | || ||| Sbjct 10823 TCCAGGACTTCAAGCGCAAGAACCGCGGAAAG-GACATCAGCACCAACAGCCGTGCCCTT 10765 Query 196067 CGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACA 196126 |||||||| | || || || || |||| ||||||||||| | |||| || Sbjct 10764 CGTCGGCTGCGTACCCAGTGCGAGCGCACCAAGAGAACTCTCTCTAGCAGCACTCAGGCA 10705 Query 196127 ATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCA 196186 | | || ||||| || | || || || ||||||| || | |||| ||||||| Sbjct 10704 ACCATCGAAATTGACTCTCTTTTCGAGGGCATTGACTACTCTGTGTCTATCTCCCGTGCG 10645 Query 196187 CGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTA 196246 |||||||| ||| | | || | || | || | || || || || | || Sbjct 10644 CGTTTTGAGGAGCTTTGCATGGACTACTTCCGCAACTCCTTGTTGCCCGTCGAGAAGGTC 10585 Query 196247 CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCA 196306 || ||| | || || ||| | ||| ||| |||| | || || ||||| Sbjct 10584 CTCAAGGACTCTGGTATTGACAAGCGTTCGGTCAGCGAAGTTGTGTTGGTTGGTGGATCT 10525 Query 196307 ACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAAC 196366 |||||||| || ||||| || ||| | | || ||||||||| || || | Sbjct 10524 ACCCGTATCCCCAAGATCCAGCAGCTCATCACTGACTTCTTCAACGGAAAGGAGCCGTGC 10465 Query 196367 AAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTC 196426 | |||||||||| ||||| || ||||| || ||||| || || ||||| || || | Sbjct 10464 AGGTCGATCAACCCTGATGAGGCCGTTGCGTACGGTGCTGCTGTCCAGGCAGCGATCTTG 10405 Query 196427 TCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCC 196486 || ||| || | || || ||| | || || || |||||||| ||| | || Sbjct 10404 AAGGGAGTTACCAGCTCCCAAGTGCAGGATTTGCTTCTTCTGGATGTTGCGCCCCTCTCT 10345 Query 196487 CTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATT 196546 || ||||| || ||||| |||||||| ||||| || | ||||| || |||||||| || Sbjct 10344 CTCGGTCTGGAGACAGCTGGTGGTGTCATGACCAAGCTGATTGAGAGAAACACAACGATC 10285 Query 196547 CCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATT 196606 |||||||||||| || ||| ||||||| | || || || ||||| || | ||| Sbjct 10284 CCGACTAAGAAGTCTCAGACCTTCACAACGTACGCGGACAACCAGCCAGGAGTGCTGATT 10225 Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || || ||||| || || | | || | || || ||| | || || || | ||| | Sbjct 10224 CAGGTGTACGAAGGTGAGCG-TGCGATGACCAAAGACAACAACCTCCTGGGCAAATTCCA 10166 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 ||| || || || | || ||| | ||||| || || || | || || ||||| Sbjct 10165 CTTGGATGGTATCCCCCCCGCCCCCCGTGGTGTCCCCCAAATCGAAGTCACTTTTGATAT 10106 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAA 196785 ||||| || || || | |||||||| || | |||||| | | || || | | Sbjct 10105 CGACGCTAACGGTATCATGAACGTCACGGCGCAAGACAAGTCCACCGGAAAGAGCAACCA 10046 Query 196786 GATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCA 196845 || || ||||| |||||||| || || | | ||||| || || ||||| || Sbjct 10045 AATCACCATCACCAACGACAAGGGCCGCCTCAGTGCGTCCGAAATCGACCGCATGGTGCA 9986 Query 196846 AGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||| || || ||||||| || |||||||| Sbjct 9985 AGAGGCAGAGAAGTACAAGGCCGAAGACGA 9956 >seq35672 Length=222 Score = 185 bits (204), Expect = 1e-41 Identities = 169/212 (80%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || ||||| ||||| |||||||| || || |||||| ||||| Sbjct 221 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 162 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || |||||||| ||||| || |||||| Sbjct 161 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 102 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||||||||| || ||| | || || || || || || |||| |||||| Sbjct 101 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 42 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| |||||||| ||||| || |||| ||| Sbjct 41 ATTCAGAAGGAGTCGACTCTCCA-CTTGGTCT 11 >seq1218 Length=18807 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || || || || || || ||||| | || || ||| | || Sbjct 15337 ATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCTTCT 15396 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||||||| |||||||| || ||||| || || ||| Sbjct 15397 GACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGACCAG 15456 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || | ||||| | || |||||| Sbjct 15457 CAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTACAAC 15516 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 | || ||||| || ||||| ||| Sbjct 15517 ATCCAGAAGGAATCCACTCTCCAC 15540 >seq4970 Length=20472 Score = 105 bits (116), Expect = 9e-18 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 195728 GCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTA 195787 |||||||||| || | || |||||||| || |||||||| | ||| ||||| || | Sbjct 13120 GCTTACTTCAACGACGCTCAGCGACAGGCCACCAAGGACGCCGGTGCGATTGCTGGCTTG 13179 Query 195788 AACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAG 195847 ||| | | | || ||||| || || || || ||||| ||||| || |||||||||||| Sbjct 13180 AACGTTATCCGTATCATCAACGAGCCGACCGCTGCTGCTATTGCGTACGGTCTGGACAAG 13239 Query 195848 AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTC 195907 || || || ||||| | | | | | ||||| ||||||||||| ||||||||| Sbjct 13240 AAGAACGA-GAAGACCA-----TCCTCGTGTACGATCTTGGTGGTGGTACTTTTGATGTC 13293 Query 195908 TCACTTCT 195915 || |||| Sbjct 13294 TCTGTTCT 13301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657563401539200