Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq36264 138 2e-26 seq4392 107 3e-17 seq36021 96.9 5e-14 seq2813 95.1 2e-13 seq12278 87.8 3e-11 >seq36264 Length=13406 Score = 138 bits (152), Expect = 2e-26 Identities = 176/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||| | | Sbjct 9814 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCAAGTTCGCCGGGTA 9755 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || ||||| ||||||||||| |||| | | || | |||||| || | Sbjct 9754 GGACAAGACGGACGGCAGTCTGGATCTCTCGGGAGGACAGAGTATCCTTCTTGTT-GTAC 9696 Query 1485590 GCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || || ||| ||||| ||| | || ||||| | ||| || || || || Sbjct 9695 TTGCAGAGCTTGCCAGCCTCAGTGGCAATTTTGTCGAAGGTATCGGCGATGAAAGAAGTC 9636 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| |||||| || ||| ||| || ||||||||||||||||| | ||||||| Sbjct 9635 ATGATCATCATCGACTTCTTGCTGATCCCAGTCTCGGGGTGCACCTGCTTCAACACCTTG 9576 >seq4392 Length=6301 Score = 107 bits (118), Expect = 3e-17 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||||||||||||||||||||| ||||| || || |||||| | || ||||| ||| Sbjct 2920 CGGTGTACTTGGTGACGGCCTTGGTGCCCTCAGACACCGCGTGCTTTGCGAGTTCTCCGG 2861 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | | || || |||||||| ||||| || |||| | | |||| |||||| | Sbjct 2860 GGAGAACCAAACGAACGGCGGTTTGGATTTCCCGGGAGGACAGAGTGTCCTTCTTGTT-G 2802 Query 1485587 TGCGCGC-CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 | | || || ||| ||||| | | |||| ||||| |||| || || || Sbjct 2801 TACTTGCAGAGCTTGCCAGCCTCCGAGGCGATCTTGTCGAAGGTGTCAGCGATGAAGGAA 2742 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||| || || ||| |||||| || |||||||||||||| | ||| Sbjct 2741 GTCATGATCATCATGGACTTCTTGCTGATGCCGGTTTCAGGGTGCACCTGCTTCAAAACC 2682 Query 1485706 TTG 1485708 ||| Sbjct 2681 TTG 2679 >seq36021 Length=4195 Score = 96.9 bits (106), Expect = 5e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| ||| | | ||||| ||||| || || |||||||||||||||||||||||| | Sbjct 3949 TCCAGAGGGCACAGAAGAGGTCGCGAGCACGTCGCTCCTCCTTGCCGTGGTTCTTTTTGA 3890 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 |||||| | |||| || || |||||| ||||||| ||| ||| | | ||| | Sbjct 3889 TGTCGAGGAAATCGAAGACATCAAAGTGCCATGGCTCCAAGTAAATGGCGAGGCTGCCTT 3830 Query 2071997 TGCGCTTGCCGCCGCC 2072012 |||| ||||||||||| Sbjct 3829 TGCGTTTGCCGCCGCC 3814 >seq2813 Length=6432 Score = 95.1 bits (104), Expect = 2e-13 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| |||||||| ||||| |||||| ||||| ||||| || | || Sbjct 3068 TGACCCCCGCCTTCTGGTACTCGCCAACGCGTTTCTCGAAGAAGTTCGTCTTCCCTTGGA 3127 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCAC-CCG 794009 | || |||||||||||||| |||||| || | || | || |||| | || || Sbjct 3128 GAGAAATCAACTCCATCCAGTCGAACGGATTCGTCGCGAAAAAGATCTTC-GGAACTCCC 3186 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTG 794050 || || | ||||| || || ||||| |||||||||||||| Sbjct 3187 AGAGAAGTCAGCAGACGATCCGCGACAAATTCAATGTACTG 3227 >seq12278 Length=2500 Score = 87.8 bits (96), Expect = 3e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| |||||| || ||||||| |||| | | | || |||| ||||| |||||||| Sbjct 2089 ACTCGACGACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGC 2148 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | || | ||| ||||| |||| ||||||||| |||| ||||||||||| |||||| Sbjct 2149 TCTTCCGATTGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCT 2208 Query 2071694 TGACGATGGCCGACCAAA 2071711 || || || |||||| Sbjct 2209 GGAGAATCGCAAACCAAA 2226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912378620962040