Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1218 107 2e-18 seq35672 102 8e-17 seq12278 95.1 1e-14 seq2813 82.4 7e-11 >seq1218 Length=18807 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| ||| | || |||||||||||||||||| Sbjct 15533 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCT 15474 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || || || || ||||| || ||||| |||| Sbjct 15473 GCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 15414 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | ||||| ||||| | |||| || |||||||| || || Sbjct 15413 ACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTC 15354 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 15353 TTCACGAAAATCTGCAT 15337 >seq35672 Length=222 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || || || || || ||||| | |||||||| Sbjct 25 GTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCG--TCCTCCAACTGCTTGC 82 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| || |||||||| || || || || ||||||||||| ||||||| || Sbjct 83 CAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCT 142 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | ||||| || || | |||| || || ||||| |||| Sbjct 143 TCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAG 202 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 203 TCTTCACAAAGATCTGCAT 221 >seq12278 Length=2500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| |||| || | ||||| |||||||||||||| |||| |||||| || | Sbjct 2086 TGTACTCGACGACTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGT 2145 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| | ||||| ||||| ||||||||||||||||| Sbjct 2146 TGCTCTTCCGATTGCAAGCGTCTTTGTACAGCATGTACGG 2185 >seq2813 Length=6432 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 || ||||||||||| | |||||| ||||||||||| || |||| |||||| || || Sbjct 3702 AGACACGCAAAGTCTGCGTGCAGTCCCTCGTCGCGAGAAATCAACTCGTTCGAGAAAGTG 3761 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| ||||| | |||| | |||| | |||| || ||| ||||| || ||| Sbjct 3762 AGGCCCGGCATCAAGCCTCGCTTCTTCAGCCAGAAAATAGCGCAGAAGCTTCCACTGAAG 3821 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACC 120789 | | ||| |||||| |||||| | ||| Sbjct 3822 AGAATGCCTTCCACGCATGCAAAGCCCACC 3851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483201085246400