Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq12278 159 3e-34 seq2813 84.2 2e-11 >seq12278 Length=2500 Score = 159 bits (176), Expect = 3e-34 Identities = 408/607 (67%), Gaps = 22/607 (4%) Strand=Plus/Plus Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 || || || |||||||| || | |||| || ||| ||| | | |||| | |||| Sbjct 1755 TCGCAACTGGCCTCGAGAGCGGCGAAGTAGATACACTCGAAGATGTTTCTGTTCAAGACG 1814 Query 147232 GTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290 ||||| ||| ||| | || ||| || ||||||| ||||| || || | |||||| Sbjct 1815 CGAGCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGCGAGACCCTG 1873 Query 147291 GATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATA 147350 || || | |||| |||||| || |||||| |||||| | | || || Sbjct 1874 GACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTTCGCTTCGGGCACAGGGTA 1933 Query 147351 GTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATT-GTTTTGA 147409 || ||| ||||| || | ||| | ||| | | | ||||| ||| | || | Sbjct 1934 GTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATTCGCTTCAA 1993 Query 147410 GTTTCTCGAAATCATAAGTCCCGTCTTCGA----CACGTACGCATTGGTTCACGGCGATA 147465 || | ||||| || |||||| | ||| |||| || |||| || | || Sbjct 1994 GTGT-TCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAAC---TTGGG-CAGCGAGACG 2048 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACGATTTCGGCGCA 147524 || |||| |||||||| ||| ||| || | ||| |||||| |||| ||| | ||| Sbjct 2049 GAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TGTACTCGACGACTTCTGTGCA 2107 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || |||||||||||| || |||||| || | ||| ||||| ||||||||||| ||||| Sbjct 2108 CAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAGCGTC 2167 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATG 147641 |||| | ||||||||||| ||| ||||||| ||||| | | || ||||| | Sbjct 2168 TTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCGCAAACCAA-- 2225 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 |||| ||| ||| | | | || |||| || || ||| |||||| ||||||||||| Sbjct 2226 -AGGTGCTGAGCTGGAATCGTCTTCCGACCCCGACCTTCGCGTTCGTAGCGCTCGTACAA 2284 Query 147702 CCGCTCAAACTCGTCGCCGTA-GCAATCGGCAAGGCCGGGACACTGATGCGGACACATCA 147760 | | || |||||||| | | || ||| ||||| |||| | |||||||||| Sbjct 2285 CTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCCGGG-CACTCGTTGGGACACATCA 2343 Query 147761 GCGACCA 147767 ||| ||| Sbjct 2344 GCGTCCA 2350 >seq2813 Length=6432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 46907 AGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACA 46966 |||| | ||||||||||| || ||| ||||||||||| || |||||||| ||||| || Sbjct 3779 AGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGACTGCA 3720 Query 46967 CACGGACTTTGCGTGTCTC 46985 | | ||||||||||||||| Sbjct 3719 CGCAGACTTTGCGTGTCTC 3701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476394580209600