Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq1392 91.5 1e-13 seq13679 89.7 5e-13 seq5665 89.7 5e-13 seq3055 89.7 5e-13 >seq1392 Length=3695 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 39776 AGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAA 39835 ||||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| | Sbjct 2554 AGGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCGA 2613 Query 39836 TCCCCGGTGCCCGTA 39850 ||| ||||||||||| Sbjct 2614 TCCTCGGTGCCCGTA 2628 >seq13679 Length=940 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| ||| Sbjct 338 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCGATC 279 Query 39838 CCCGGTGCCCGTAT 39851 | |||||||||||| Sbjct 278 CTCGGTGCCCGTAT 265 >seq5665 Length=13282 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 39774 TCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTC 39833 ||| ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| Sbjct 8275 TCAAGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTC 8334 Query 39834 AATCCCCGGTGCCCGTA 39850 |||| ||||||||||| Sbjct 8335 GATCCTCGGTGCCCGTA 8351 >seq3055 Length=5112 Score = 89.7 bits (98), Expect = 5e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 39775 CAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCA 39834 || ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| Sbjct 3979 CAAGCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCG 4038 Query 39835 ATCCCCGGTGCCCGTAT 39851 |||| |||||||||||| Sbjct 4039 ATCCTCGGTGCCCGTAT 4055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465912946278400