Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq17399 107 2e-18 >seq17399 Length=5604 Score = 107 bits (118), Expect = 2e-18 Identities = 170/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 146907 CAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTG 146966 |||||| ||| | | ||| |||||||| |||||| |||| || ||||| | ||| Sbjct 720 CAGCTGCTCTTTTAAAGCCTCGACGTGGTTCGAGTAGACATGCGTGTTCCCCATGAAGTG 779 Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 | || |||| || || ||| | ||||| || |||||| || | ||||| || Sbjct 780 AATGAACTCCCTAGGTTTTAGGTTGCAGACGTGTGCAACCATGAGCGTCAAAAGCGAATA 839 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 | || |||||||||||||| || ||||| | || | ||||| ||| |||| ||| Sbjct 840 GGAAGCAATGTTGAAGGGGACGCCGAGGCCGACATCGCACGACCGCTGATACATGATGCA 899 Query 147087 CGAGAGCTC---CCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGC 147143 || | ||| | |||| |||||| ||||| |||| | |||||| |||||||| || Sbjct 900 GGACAACTCTTTCTGGTCGTTCACGTAGAACTGACACAACAAGTGGCAAGGCGGCAGAGC 959 Query 147144 CAT 147146 ||| Sbjct 960 CAT 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583222804704000