Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2019 98.7 1e-14 >seq2019 Length=12628 Score = 98.7 bits (108), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 1601276 ACCAGCGGCACCTGCGGGTAGCACAGGGCGTGCGACACCGTGTCGATGGCATGGTCGG-C 1601334 ||||||||| ||| || ||| |||| ||||| || |||||| || ||||| | | Sbjct 5470 ACCAGCGGCTTCTGGGGATAGTACAGCAAGTGCGCCAGCGTGTCCATCCGATGGTTGAAC 5411 Query 1601335 GTTGAGCGACACGACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGG 1601394 | ||| || || || | |||||| ||||| |||| ||| |||| ||| ||||| Sbjct 5410 GACGAGGTGTAC-ACTCCCATCGCCTGCTTCCCCATAGCCGACTGATAGACGTTACGCGG 5352 Query 1601395 CGCCTGGTTGTGGTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGG 1601454 | ||||||||||| | |||||| |||||| |||||| | ||||| || ||| || Sbjct 5351 AGACTGGTTGTGGTCTGGAAACGGAATGATGCTCGCGCAAACTCCCAGAATCAGCGAGGG 5292 Query 1601455 GTGGACCTCGACGTGCGT 1601472 ||| | |||| |||||| Sbjct 5291 GTGAATCTCGCAGTGCGT 5274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174304211170320